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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 1
  • cytosol 4
  • plasma membrane 1
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, mitochondrion, nucleus, plasma membrane
BaCelLo:nucleus
EpiLoc:cytosol
MultiLoc:cytosol
Plant-mPloc:plasma membrane
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX90513 Canola cytosol 99.6 99.6
Bra012707.1-P Field mustard cytosol 39.2 39.84
Bra012704.1-P Field mustard cytosol, extracellular, vacuole 22.4 39.44
Bra040740.1-P Field mustard cytosol 38.8 38.04
Bra038485.1-P Field mustard cytosol 34.0 37.78
Bra038484.1-P Field mustard cytosol 39.2 36.98
Bra008244.1-P Field mustard cytosol 35.6 31.45
Bra024932.1-P Field mustard cytosol 26.8 26.59
Bra024930.1-P Field mustard cytosol 27.2 26.15
Bra012705.1-P Field mustard cytosol 41.2 25.81
Bra022079.1-P Field mustard cytosol 20.0 24.88
Bra024976.1-P Field mustard cytosol 25.2 23.68
Bra034108.1-P Field mustard cytosol 21.2 22.55
Bra022083.1-P Field mustard cytosol 16.0 21.39
Bra022051.1-P Field mustard cytosol 22.0 21.32
Bra022085.2-P Field mustard cytosol 12.0 18.52
Bra022080.1-P Field mustard cytosol 7.6 17.43
Bra002567.1-P Field mustard cytosol 23.6 15.49
Protein Annotations
EnsemblPlants:Bra012708.1EnsemblPlants:Bra012708.1-PEnsemblPlantsGene:Bra012708InterPro:HSP20PANTHER:PTHR11527PANTHER:PTHR11527:SF95
UniParc:UPI00025408C1UniProt:M4D898MapMan:35.1:::
Description
AT4G16550 (E=3e-043) | heat shock protein-related
Coordinates
chrA03:-:22617374..22618339
Molecular Weight (calculated)
27556.8 Da
IEP (calculated)
6.676
GRAVY (calculated)
-0.290
Length
250 amino acids
Sequence
(BLAST)
001: MLMVAEGYYA TNNPFQKHGP KGFTETKMIG VRKLFVRTDL PGVGQDEYTA SIDESKKSVT IRTWPPPPFI NIAFHPRIYK TTTHLKCDCC EIGSFTHQVS
101: DGVLRLVITM TPINNQDQIP DVQEEGRHRF LHDTDNYAAE FTGHTLLVHP DLLLPEGSPP RMAYAFKQLP DGSAHVSLDM PGVSKGYFTA EVEDGTRVIV
201: TGRAPAVSHD SNGRFYSAIA ATISNPTGTN LVFTVEGGPE NGVLRLNIRV
Best Arabidopsis Sequence Match ( AT2G03020.1 )
(BLAST)
001: MAMAVPVSAR PQSPEGFYAI NNQFQTNGPK GFSEIKILAN EDMFLRMDLP GVPDEGGLSV YHNRSQETVV VFAKAPKVHT HDSTERRYQT MTGIGCSCCA
101: ISSITTHMSD GVFRVILSKT RIDPHRSPCT VLGCSGFRED LRGTDPNDPA LTGPVLQPHP LAFPQPTMAY ESKQLPNGKL FVRADMPGVP KENFTVSVTN
201: GRVKVTGQAP AVSHDSSGRF YSGDVAMLST PVDIPSRRIK TIAKNGVIRL LIPPF
Arabidopsis Description
Heat shock protein HSP20/alpha crystallin family [Source:UniProtKB/TrEMBL;Acc:Q84X24]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.