Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX90510 | Canola | cytosol | 63.16 | 96.18 |
| CDY09679 | Canola | cytosol | 58.4 | 93.57 |
| AT4G16545.1 | Thale cress | cytosol | 42.61 | 64.89 |
| Bra040740.1-P | Field mustard | cytosol | 41.1 | 64.31 |
| Bra038484.1-P | Field mustard | cytosol | 38.6 | 58.11 |
| Bra012704.1-P | Field mustard | cytosol, extracellular, vacuole | 19.3 | 54.23 |
| Bra038485.1-P | Field mustard | cytosol | 28.32 | 50.22 |
| Bra008244.1-P | Field mustard | cytosol | 30.33 | 42.76 |
| Bra012708.1-P | Field mustard | cytosol | 25.81 | 41.2 |
| Bra012707.1-P | Field mustard | cytosol | 24.06 | 39.02 |
| Bra024932.1-P | Field mustard | cytosol | 20.05 | 31.75 |
| Bra022079.1-P | Field mustard | cytosol | 14.54 | 28.86 |
| Bra024930.1-P | Field mustard | cytosol | 18.8 | 28.85 |
| Bra024976.1-P | Field mustard | cytosol | 18.8 | 28.2 |
| Bra034108.1-P | Field mustard | cytosol | 16.54 | 28.09 |
| Bra022083.1-P | Field mustard | cytosol | 12.78 | 27.27 |
| Bra022080.1-P | Field mustard | cytosol | 7.02 | 25.69 |
| Bra022051.1-P | Field mustard | cytosol | 16.54 | 25.58 |
| Bra022085.2-P | Field mustard | cytosol | 9.27 | 22.84 |
| Bra002567.1-P | Field mustard | cytosol | 16.79 | 17.59 |
Protein Annotations
Description
AT4G16550 (E=7e-102) | heat shock protein-related
Coordinates
chrA03:-:22628878..22632350
Molecular Weight (calculated)
43814.6 Da
IEP (calculated)
7.572
GRAVY (calculated)
-0.285
Length
399 amino acids
Sequence
(BLAST)
(BLAST)
001: MPVMNIGPVP QSHDGFYARN NPYQVNGPKG FTEFKLMEEN EDLYARFDFP GVTKESLRIL VEPLKKAVFV FGDAPKEFRH DSSHRKYGTV TGLVCDCCEI
101: SNIQCFVGDG VVRLILSKKK INLHVPFSSR IINGYNPEAH LRGHNGHNAE EGFYAVNNPF LVSGPKGFTE FKMLENEDMF IRIDFPGVPQ DAIKVRIDPT
201: KKAVSITADA PKEHKHDSAP RNYGSATGLV CKCCEISGLV SHMSDGVLRL HLSKTRASTQ SPSCISFLGG PDREDRCSTG PHTFPHGTDP HDPELTGPLL
301: EPHPCVNIGS DMAYEWKILP NGGLYVRVDM PGVPKDRFTV SVVNGRVMVT GDAPAVSLDS GGRFYSGEVA MLESQVSIPG RKIKTIAKNG VIRLIIPPL
101: SNIQCFVGDG VVRLILSKKK INLHVPFSSR IINGYNPEAH LRGHNGHNAE EGFYAVNNPF LVSGPKGFTE FKMLENEDMF IRIDFPGVPQ DAIKVRIDPT
201: KKAVSITADA PKEHKHDSAP RNYGSATGLV CKCCEISGLV SHMSDGVLRL HLSKTRASTQ SPSCISFLGG PDREDRCSTG PHTFPHGTDP HDPELTGPLL
301: EPHPCVNIGS DMAYEWKILP NGGLYVRVDM PGVPKDRFTV SVVNGRVMVT GDAPAVSLDS GGRFYSGEVA MLESQVSIPG RKIKTIAKNG VIRLIIPPL
001: MVVPLRAIPS SREGFYAINN QFQANGPKGF MEFKMLENED MYVRIDFPGV PRDGVRVFLD QSKKAVCIFA DAPKEHKYDY SERNYGTSTG LVCKCCEISG
101: FTSFMSDGVL RLLLTKSNIT PQRSSCISFL AGPDFREDLR GNGPHKFPHG TDPNDPKLTG RILMPHPCVN YGSEMAYESK QLQNGGLYVR VDMPGVPKEN
201: FTVAVMNGRV RVTGEAPAIS HDSSGRFYTG DVAMLSTPFD IPIRKIKIIA KNGVIRLIIP PV
101: FTSFMSDGVL RLLLTKSNIT PQRSSCISFL AGPDFREDLR GNGPHKFPHG TDPNDPKLTG RILMPHPCVN YGSEMAYESK QLQNGGLYVR VDMPGVPKEN
201: FTVAVMNGRV RVTGEAPAIS HDSSGRFYTG DVAMLSTPFD IPIRKIKIIA KNGVIRLIIP PV
Arabidopsis Description
Heat shock protein HSP20/alpha crystallin family protein [Source:UniProtKB/TrEMBL;Acc:A0A1P8B7R1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.