Factsheet for Bra022085.2-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
extracellular 1
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000393.1-P
Bra004928.1-P
Bra039324.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G47590.1	Bra000393.1-P	AT2G45660.1	21798944
AT5G47590.1	Bra004928.1-P	AT2G45660.1	21798944
AT5G47590.1	Bra039324.1-P	AT2G45660.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra022080.1-P	Field mustard	cytosol	67.28	100.0
Bra022083.1-P	Field mustard	cytosol	83.33	72.19
CDY37164	Canola	mitochondrion	72.22	64.29
Bra022079.1-P	Field mustard	cytosol	59.26	47.76
Bra034108.1-P	Field mustard	cytosol	65.43	45.11
Bra022051.1-P	Field mustard	cytosol	67.9	42.64
Bra024976.1-P	Field mustard	cytosol	66.05	40.23
Bra024932.1-P	Field mustard	cytosol	53.7	34.52
AT5G47590.1	Thale cress	cytosol	50.62	31.06
Bra024930.1-P	Field mustard	cytosol	47.53	29.62
Bra002567.1-P	Field mustard	cytosol	51.23	21.78
Bra012704.1-P	Field mustard	cytosol, extracellular, vacuole	18.52	21.13
Bra038484.1-P	Field mustard	cytosol	25.31	15.47
Bra012707.1-P	Field mustard	cytosol	22.22	14.63
Bra040740.1-P	Field mustard	cytosol	22.84	14.51
Bra038485.1-P	Field mustard	cytosol	19.14	13.78
Bra012708.1-P	Field mustard	cytosol	18.52	12.0
Bra008244.1-P	Field mustard	cytosol	20.37	11.66
Bra012705.1-P	Field mustard	cytosol	22.84	9.27

Protein Annotations

EnsemblPlants:Bra022085.2

EnsemblPlants:Bra022085.2-P

EnsemblPlantsGene:Bra022085

UniParc:UPI0002546116

UniProt:M4DZY8

MapMan:35.2

Description

AT5G47590 (E=3e-010) | heat shock protein-related

Coordinates

chrA02:+:19141760..19142450

Molecular Weight (calculated)

17599.0 Da

IEP (calculated)

5.720

GRAVY (calculated)

-0.343

Length

162 amino acids

Sequence
(BLAST)

001: MVQSMFRTTR SARRNSRDGS GEETLSDKKN ALGYSGTACL GCDCCEITGV DAKMKDGVLR MIVSRVKVKD HDNKCTLFLP PNTGVCGDDM LVLPNENEVK
101: FYGENKEVCE HDESCRIFMG AVKGSSFCAP GVPPLSHDIA WDAEFGVLKV RVSPPGSNIS SE

Best Arabidopsis Sequence Match ( AT5G47590.1 )
(BLAST)

001: MGETKADFRD MSRIPKVREG FYATNNQFQK AGPKGFVQVK VLENDNLYVR VDLPGVPDDA VRYRVDAVRQ KVVFFSGETL NNGKEGVRQY SGTAGLGCDC
101: CEITGVDAKM KDGVLRMILT RVKVVSKAQD NNNNKCTLTV PPFTGQSGIR LEDHPCLVSG RKGALIGVTK AGGGAHFAVD MPGVSPDDVE VYADEKEIRF
201: KAEIKDVYEH DESGRTYLGS VQSPFPALIS NNTIAWDAEF GVLRIAVIPP DDMTTINNKR NPIE

Arabidopsis Description

Heat shock protein HSP20/alpha crystallin family [Source:UniProtKB/TrEMBL;Acc:Q9FGJ8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.