Factsheet for Bra002567.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 2
cytosol 3
extracellular 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000393.1-P
Bra004928.1-P
Bra039324.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G47590.1	Bra000393.1-P	AT2G45660.1	21798944
AT5G47590.1	Bra004928.1-P	AT2G45660.1	21798944
AT5G47590.1	Bra039324.1-P	AT2G45660.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra024976.1-P	Field mustard	cytosol	47.77	68.42
Bra034108.1-P	Field mustard	cytosol	40.68	65.96
Bra022079.1-P	Field mustard	cytosol	33.6	63.68
CDY33037	Canola	cytosol	54.33	61.42
Bra022083.1-P	Field mustard	cytosol	28.87	58.82
Bra022051.1-P	Field mustard	cytosol	35.7	52.71
Bra022085.2-P	Field mustard	cytosol	21.78	51.23
Bra022080.1-P	Field mustard	cytosol	14.44	50.46
AT5G47590.1	Thale cress	cytosol	34.91	50.38
Bra024930.1-P	Field mustard	cytosol	33.86	49.62
Bra024932.1-P	Field mustard	cytosol	32.02	48.41
Bra038484.1-P	Field mustard	cytosol	17.85	25.66
Bra040740.1-P	Field mustard	cytosol	17.06	25.49
Bra012708.1-P	Field mustard	cytosol	15.49	23.6
Bra038485.1-P	Field mustard	cytosol	13.91	23.56
Bra012707.1-P	Field mustard	cytosol	14.7	22.76
Bra008244.1-P	Field mustard	cytosol	16.27	21.91
Bra012704.1-P	Field mustard	cytosol, extracellular, vacuole	7.61	20.42
Bra012705.1-P	Field mustard	cytosol	17.59	16.79

Protein Annotations

EnsemblPlants:Bra002567.1	EnsemblPlants:Bra002567.1-P	EnsemblPlantsGene:Bra002567	InterPro:HSP20-like_chaperone	InterPro:IPR008978	InterPro:OSBP_sf
InterPro:Oxysterol-bd	ncoils:Coil	PANTHER:PTHR10972	PANTHER:PTHR10972:SF136	PFAM:PF01237	SEG:seg
SUPFAM:SSF144000	SUPFAM:SSF49764	UniParc:UPI0002543B1D	UniProt:M4CED6	MapMan:35.1	:

Description

AT5G47590 (E=1e-062) | heat shock protein-related

Coordinates

chrA10:+:8835693..8838534

Molecular Weight (calculated)

43299.9 Da

IEP (calculated)

6.355

GRAVY (calculated)

-0.589

Length

381 amino acids

Sequence
(BLAST)

001: MAAYIDMSRI PYIPGRLHAT NNPYQRYGPK GFMEIKVLHN DNLYVRVDLP GVPDDAIRYR VDAVRQKGVF FSGEETLRDG YKADDVREYS GTAGLGCDCC
101: EITGVEAKMK DGVLRMILAR VKVKDHDKKC TRFLPPNTGK SGRYDVNSFN CVEVEGHPFV VKGRKDTLAS HRTSDGCYHF SVDMPGVCGD DMFVIPNENE
201: IKFYGENKEV CMSTMRVAVF SLEPSAMFNA VWHVADVPKN DKFQYTHFGH KINSFDTAPS KLLASDSRLR PVRYALEQAD LSKDTLRIGF CINIINESFL
301: EERQRAENKT RETKNQKFTP RWFDLTDEIT STPWGDTEIY QYNGKYTEHR DAAASSSGAS DEVDLKSIEF NPWQYGNVST E

Best Arabidopsis Sequence Match ( AT5G47590.1 )
(BLAST)

001: MGETKADFRD MSRIPKVREG FYATNNQFQK AGPKGFVQVK VLENDNLYVR VDLPGVPDDA VRYRVDAVRQ KVVFFSGETL NNGKEGVRQY SGTAGLGCDC
101: CEITGVDAKM KDGVLRMILT RVKVVSKAQD NNNNKCTLTV PPFTGQSGIR LEDHPCLVSG RKGALIGVTK AGGGAHFAVD MPGVSPDDVE VYADEKEIRF
201: KAEIKDVYEH DESGRTYLGS VQSPFPALIS NNTIAWDAEF GVLRIAVIPP DDMTTINNKR NPIE

Arabidopsis Description

Heat shock protein HSP20/alpha crystallin family [Source:UniProtKB/TrEMBL;Acc:Q9FGJ8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.