Factsheet for Bra022083.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 4
plastid 1
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	secretory
MultiLoc:	cytosol
Plant-mPloc:	cytosol, nucleus, plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000393.1-P
Bra004928.1-P
Bra039324.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G47590.1	Bra000393.1-P	AT2G45660.1	21798944
AT5G47590.1	Bra004928.1-P	AT2G45660.1	21798944
AT5G47590.1	Bra039324.1-P	AT2G45660.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra022080.1-P	Field mustard	cytosol	58.29	100.0
Bra022085.2-P	Field mustard	cytosol	72.19	83.33
CDY37166	Canola	cytosol	100.0	82.38
Bra022079.1-P	Field mustard	cytosol	67.91	63.18
Bra034108.1-P	Field mustard	cytosol	72.73	57.87
Bra022051.1-P	Field mustard	cytosol	74.33	53.88
Bra024976.1-P	Field mustard	cytosol	72.73	51.13
Bra024932.1-P	Field mustard	cytosol	60.43	44.84
AT5G47590.1	Thale cress	cytosol	57.22	40.53
Bra024930.1-P	Field mustard	cytosol	55.62	40.0
Bra002567.1-P	Field mustard	cytosol	58.82	28.87
Bra038484.1-P	Field mustard	cytosol	31.02	21.89
Bra012704.1-P	Field mustard	cytosol, extracellular, vacuole	16.04	21.13
Bra040740.1-P	Field mustard	cytosol	28.34	20.78
Bra038485.1-P	Field mustard	cytosol	24.06	20.0
Bra012707.1-P	Field mustard	cytosol	26.2	19.92
Bra008244.1-P	Field mustard	cytosol	24.6	16.25
Bra012708.1-P	Field mustard	cytosol	21.39	16.0
Bra012705.1-P	Field mustard	cytosol	27.27	12.78

Protein Annotations

EnsemblPlants:Bra022083.1	EnsemblPlants:Bra022083.1-P	EnsemblPlantsGene:Bra022083	Gene3D:2.60.40.790	InterPro:HSP20	InterPro:HSP20-like_chaperone
InterPro:IPR008978	PANTHER:PTHR11527	PANTHER:PTHR11527:SF238	SUPFAM:SSF49764	UniParc:UPI0002546114	UniProt:M4DZY6
MapMan:35.2	:	:	:	:	:

Description

AT5G47590 (E=3e-037) | heat shock protein-related

Coordinates

chrA02:+:19133039..19142450

Molecular Weight (calculated)

20458.3 Da

IEP (calculated)

4.490

GRAVY (calculated)

-0.327

Length

187 amino acids

Sequence
(BLAST)

001: MEIKILENDN LYVRVDMPGV PDDGVHHKVD SMRQKVVYFS GEETLGSDGD KVDDDVREYS GTAGLGCNCC EITGVDAKMK DGVLRMIVSR VKVKDHDNKC
101: TLFLPPNTGV CGDDMLVLPN ENEVKFYGEN KEVCEHDESC RIFMGAVKGS SFCAPGVPPL SHDIAWDAEF GVLKVRVSPP GSNISSE

Best Arabidopsis Sequence Match ( AT5G47590.1 )
(BLAST)

001: MGETKADFRD MSRIPKVREG FYATNNQFQK AGPKGFVQVK VLENDNLYVR VDLPGVPDDA VRYRVDAVRQ KVVFFSGETL NNGKEGVRQY SGTAGLGCDC
101: CEITGVDAKM KDGVLRMILT RVKVVSKAQD NNNNKCTLTV PPFTGQSGIR LEDHPCLVSG RKGALIGVTK AGGGAHFAVD MPGVSPDDVE VYADEKEIRF
201: KAEIKDVYEH DESGRTYLGS VQSPFPALIS NNTIAWDAEF GVLRIAVIPP DDMTTINNKR NPIE

Arabidopsis Description

Heat shock protein HSP20/alpha crystallin family [Source:UniProtKB/TrEMBL;Acc:Q9FGJ8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.