CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
mitochondrion 2
extracellular 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, extracellular, nucleus
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	extracellular
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX74755
CDY27368
CDY37054
CDY53886
CDY60689
CDY69077

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G47590.1	CDX74755	AT2G45660.1	21798944
AT5G47590.1	CDY27368	AT2G45660.1	21798944
AT5G47590.1	CDY37054	AT2G45660.1	21798944
AT5G47590.1	CDY53886	AT2G45660.1	21798944
AT5G47590.1	CDY60689	AT2G45660.1	21798944
AT5G47590.1	CDY69077	AT2G45660.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra022083.1-P	Field mustard	cytosol	82.38	100.0
CDX84467	Canola	cytosol	40.53	85.19
CDY43630	Canola	cytosol	41.41	81.03
CDX87694	Canola	cytosol	68.28	79.08
CDY67243	Canola	cytosol	56.39	71.91
CDY53682	Canola	cytosol	79.74	68.56
CDY37163	Canola	mitochondrion	58.15	67.35
CDX77721	Canola	cytosol	72.25	61.19
CDX80270	Canola	cytosol	70.48	60.84
CDY43629	Canola	cytosol	49.34	59.26
CDY56707	Canola	cytosol	67.84	58.33
CDY41336	Canola	cytosol	68.28	58.27
CDX77719	Canola	cytosol	57.27	56.77
CDY33502	Canola	cytosol	60.35	51.7
CDX77779	Canola	cytosol	58.15	51.16
CDY37164	Canola	mitochondrion	40.53	50.55
CDY17724	Canola	cytosol	55.07	49.6
CDX77784	Canola	cytosol	53.74	47.47
AT5G47590.1	Thale cress	cytosol	54.19	46.59
CDX77781	Canola	cytosol	52.86	46.33
CDY17722	Canola	cytosol	51.98	45.38
CDY33037	Canola	cytosol	61.67	41.54
CDY32265	Canola	cytosol	30.84	26.42
CDY09681	Canola	cytosol	25.99	25.65
CDY40538	Canola	cytosol	29.07	24.91
CDY09703	Canola	plastid	26.87	23.92
CDX90512	Canola	cytosol	25.99	23.79
CDY50850	Canola	cytosol	27.75	23.77
CDY53640	Canola	cytosol	27.75	23.77
CDX90510	Canola	cytosol	26.43	22.9
CDY32266	Canola	cytosol	22.47	22.67
CDY40537	Canola	cytosol	22.03	22.22
CDY09679	Canola	cytosol	23.35	21.29
CDY09677	Canola	extracellular	12.78	21.17
CDX90513	Canola	cytosol	22.47	20.4
CDY09678	Canola	cytosol	24.23	20.15
CDY50905	Canola	cytosol	25.11	20.14
CDX90509	Canola	cytosol	22.91	19.62
CDX90508	Canola	extracellular	11.89	19.15
CDY63876	Canola	cytosol	20.26	17.69
CDY46006	Canola	cytosol	18.94	17.13
CDY46005	Canola	mitochondrion	11.45	15.66
CDY09683	Canola	cytosol	8.81	14.49

Protein Annotations

EnsemblPlants:CDY37166	EnsemblPlantsGene:GSBRNA2T00063431001	Gene3D:2.60.40.790	InterPro:HSP20	InterPro:HSP20-like_chaperone	InterPro:IPR008978
PANTHER:PTHR11527	PANTHER:PTHR11527:SF95	ProteinID:CDY37166	ProteinID:CDY37166.1	SUPFAM:SSF49764	UniParc:UPI0004EF39D1
UniProt:A0A078HHH9	MapMan:35.2	:	:	:	:

Description

BnaA02g24850DBnaA02g24850D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HHH9]

Coordinates

chrLK032393:+:228393..229230

Molecular Weight (calculated)

25211.1 Da

IEP (calculated)

4.784

GRAVY (calculated)

-0.312

Length

227 amino acids

Sequence
(BLAST)

001: MAEARLLDMS RVPFIPGLPY FTWRIHATNN EFQRYGPKVF MEIKILENDN LYVRVDMPGV PDDGVHHKVD SMRQKVVYFS GEETLGSDGD KVDDDVREYS
101: GTAGLGCNCC EITGVDAKMK DGVLRMIVSR VKVKDHDNKC TLFLPPNTGV CGDDMLVLPN ENEVKFYGEN KEVCEHDESC RIFMGAVKGS SFCAPGVPPL
201: SHDIAWDAEF GVLKVRVSPP GSNISSE

Best Arabidopsis Sequence Match ( AT5G47590.1 )
(BLAST)

001: MGETKADFRD MSRIPKVREG FYATNNQFQK AGPKGFVQVK VLENDNLYVR VDLPGVPDDA VRYRVDAVRQ KVVFFSGETL NNGKEGVRQY SGTAGLGCDC
101: CEITGVDAKM KDGVLRMILT RVKVVSKAQD NNNNKCTLTV PPFTGQSGIR LEDHPCLVSG RKGALIGVTK AGGGAHFAVD MPGVSPDDVE VYADEKEIRF
201: KAEIKDVYEH DESGRTYLGS VQSPFPALIS NNTIAWDAEF GVLRIAVIPP DDMTTINNKR NPIE

Arabidopsis Description

Heat shock protein HSP20/alpha crystallin family [Source:UniProtKB/TrEMBL;Acc:Q9FGJ8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.