CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
mitochondrion 2
cytosol 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, secretory
BaCelLo:	secretory
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX74755
CDY27368
CDY37054
CDY53886
CDY60689
CDY69077

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G47590.1	CDX74755	AT2G45660.1	21798944
AT5G47590.1	CDY27368	AT2G45660.1	21798944
AT5G47590.1	CDY37054	AT2G45660.1	21798944
AT5G47590.1	CDY53886	AT2G45660.1	21798944
AT5G47590.1	CDY60689	AT2G45660.1	21798944
AT5G47590.1	CDY69077	AT2G45660.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY43630	Canola	cytosol	62.04	57.76
CDX87694	Canola	cytosol	75.93	41.84
CDY37166	Canola	cytosol	85.19	40.53
CDY53682	Canola	cytosol	87.96	35.98
CDY37164	Canola	mitochondrion	52.78	31.32
CDX80270	Canola	cytosol	73.15	30.04
CDX77721	Canola	cytosol	74.07	29.85
CDY33502	Canola	cytosol	73.15	29.81
CDY41336	Canola	cytosol	72.22	29.32
CDY56707	Canola	cytosol	71.3	29.17
CDY43629	Canola	cytosol	50.93	29.1
CDY67243	Canola	cytosol	43.52	26.4
CDY17724	Canola	cytosol	59.26	25.4
CDX77779	Canola	cytosol	60.19	25.19
CDX77719	Canola	cytosol	49.07	23.14
CDX77781	Canola	cytosol	54.63	22.78
CDX77784	Canola	cytosol	52.78	22.18
CDY09677	Canola	extracellular	27.78	21.9
CDY17722	Canola	cytosol	50.0	20.77
AT5G47590.1	Thale cress	cytosol	49.07	20.08
CDX90508	Canola	extracellular	25.93	19.86
CDY33037	Canola	cytosol	57.41	18.4
CDY37163	Canola	mitochondrion	32.41	17.86
CDY46005	Canola	mitochondrion	20.37	13.25
CDY09683	Canola	cytosol	15.74	12.32
CDY09703	Canola	plastid	28.7	12.16
CDY09679	Canola	cytosol	25.93	11.24
CDX90512	Canola	cytosol	25.0	10.89
CDX90510	Canola	cytosol	25.93	10.69
CDY40537	Canola	cytosol	22.22	10.67
CDY32265	Canola	cytosol	25.93	10.57
CDY09681	Canola	cytosol	22.22	10.43
CDY32266	Canola	cytosol	21.3	10.22
CDY40538	Canola	cytosol	25.0	10.19
CDY50905	Canola	cytosol	24.07	9.19
CDY53640	Canola	cytosol	22.22	9.06
CDY63876	Canola	cytosol	21.3	8.85
CDY09678	Canola	cytosol	22.22	8.79
CDY50850	Canola	cytosol	21.3	8.68
CDX90509	Canola	cytosol	19.44	7.92
CDX90513	Canola	cytosol	17.59	7.6
CDY46006	Canola	cytosol	12.96	5.58

Protein Annotations

EnsemblPlants:CDX84467

EnsemblPlantsGene:GSBRNA2T00141680001

ProteinID:CDX84467

ProteinID:CDX84467.1

UniParc:UPI0004EF3288

MapMan:35.2

Description

BnaC03g50330D

Coordinates

chrLK031837:+:1292853..1293320

Molecular Weight (calculated)

11910.4 Da

IEP (calculated)

7.985

GRAVY (calculated)

-0.254

Length

108 amino acids

Sequence
(BLAST)

001: MKDGVLRMIV SRVKVKDHGK KCTHTLPPNT GVCGDDILVL PNENEVKFYG ENKEVYEHDE SCRIFMGAVN GAFFCAPGVP LSSHHIAWDA EFGVLKVRIS
101: PPGRARSS

Best Arabidopsis Sequence Match ( AT5G47590.1 )
(BLAST)

001: MGETKADFRD MSRIPKVREG FYATNNQFQK AGPKGFVQVK VLENDNLYVR VDLPGVPDDA VRYRVDAVRQ KVVFFSGETL NNGKEGVRQY SGTAGLGCDC
101: CEITGVDAKM KDGVLRMILT RVKVVSKAQD NNNNKCTLTV PPFTGQSGIR LEDHPCLVSG RKGALIGVTK AGGGAHFAVD MPGVSPDDVE VYADEKEIRF
201: KAEIKDVYEH DESGRTYLGS VQSPFPALIS NNTIAWDAEF GVLRIAVIPP DDMTTINNKR NPIE

Arabidopsis Description

Heat shock protein HSP20/alpha crystallin family [Source:UniProtKB/TrEMBL;Acc:Q9FGJ8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.