CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 5
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY50905	Canola	cytosol	66.27	38.87
CDY09677	Canola	extracellular	31.33	37.96
CDX90508	Canola	extracellular	31.33	36.88
CDY09683	Canola	cytosol	26.51	31.88
CDY09678	Canola	cytosol	48.19	29.3
CDY09679	Canola	cytosol	41.57	27.71
CDX90510	Canola	cytosol	40.96	25.95
CDY32265	Canola	cytosol	40.96	25.66
CDY40537	Canola	cytosol	31.93	23.56
CDY32266	Canola	cytosol	31.93	23.56
CDY40538	Canola	cytosol	36.75	23.02
CDY50850	Canola	cytosol	36.75	23.02
CDY53640	Canola	cytosol	36.75	23.02
CDX90509	Canola	cytosol	36.14	22.64
CDY63876	Canola	cytosol	34.34	21.92
CDX90513	Canola	cytosol	31.93	21.2
CDY09703	Canola	plastid	31.93	20.78
CDX90512	Canola	cytosol	30.72	20.56
CDX84467	Canola	cytosol	13.25	20.37
CDY09681	Canola	cytosol	27.71	20.0
CDY37164	Canola	mitochondrion	18.67	17.03
CDX77784	Canola	cytosol	24.7	15.95
CDY43629	Canola	cytosol	17.47	15.34
CDY17724	Canola	cytosol	22.29	14.68
CDX77781	Canola	cytosol	22.89	14.67
CDX77779	Canola	cytosol	22.29	14.34
CDY17722	Canola	cytosol	22.29	14.23
CDX80270	Canola	cytosol	22.29	14.07
CDY43630	Canola	cytosol	9.64	13.79
CDX77721	Canola	cytosol	21.69	13.43
CDX87694	Canola	cytosol	15.66	13.27
CDY53682	Canola	cytosol	21.08	13.26
CDY56707	Canola	cytosol	21.08	13.26
CDY33502	Canola	cytosol	21.08	13.21
CDY41336	Canola	cytosol	21.08	13.16
CDX77719	Canola	cytosol	16.87	12.23
CDY37166	Canola	cytosol	15.66	11.45
CDY37163	Canola	mitochondrion	11.45	9.69
CDY67243	Canola	cytosol	10.24	9.55
CDY33037	Canola	cytosol	19.28	9.5
CDY46006	Canola	cytosol	5.42	3.59

Protein Annotations

EnsemblPlants:CDY46005	EnsemblPlantsGene:GSBRNA2T00083117001	Gene3D:2.60.40.790	InterPro:A-crystallin/Hsp20_dom	InterPro:HSP20	InterPro:HSP20-like_chaperone
InterPro:IPR002068	InterPro:IPR008978	PANTHER:PTHR11527	PANTHER:PTHR11527:SF95	PFAM:PF00011	PFscan:PS01031
ProteinID:CDY46005	ProteinID:CDY46005.1	SUPFAM:SSF49764	UniParc:UPI0004EE4CAC	UniProt:A0A078I563	MapMan:35.1

Description

BnaA02g17910DBnaA02g17910D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I563]

Coordinates

chrLK032645:-:185564..186900

Molecular Weight (calculated)

17896.1 Da

IEP (calculated)

8.477

GRAVY (calculated)

-0.460

Length

166 amino acids

Sequence
(BLAST)

001: MNRIDKNKRN LHASRAYTSV RASSSLSRLI RGYDPEVAGG HPLAHLRGHG PQGDRGTDPL DPAFTGPDIV PNPLVQTGST SAYESKQLSD GGLFLRIDMP
101: GVPNDKFAVT VENGCVTVTG RAPAAMDDSS GREYRGNVAV VPRDYDSRRI EAFANEGVIR LIIHSI

Best Arabidopsis Sequence Match ( AT4G16550.1 )
(BLAST)

001: MSIPHIAPVP HPRDGYYATN NPYQVNGPKG FTEFKYLEET HDLFVRLDFP GIQKESVIIL LEPSKKAVIV TGEAPKESKH DSSHRKYGTA TGLICDCCEI
101: SNIQCFVGDG VVRLILSKQK INLRVPIFCS FGGARMPTDA SPNIIRGYNP EVAGGHPLAH LRGLNPEGCR GTDPFDPAFT GPTIRPHPSV LEGSTSAYET
201: KQLSNGGLYL RIDMPGVPSD GFIVAVDGNG VVTIMGRAPA TMHDSSGRSY VCKVAIVPRG YAGVGSR

Arabidopsis Description

HSP20-like chaperone [Source:TAIR;Acc:AT4G16550]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.