CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
cytosol 1
mitochondrion 3
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX74755
CDY27368
CDY37054
CDY53886
CDY60689
CDY69077

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G47590.1	CDX74755	AT2G45660.1	21798944
AT5G47590.1	CDY27368	AT2G45660.1	21798944
AT5G47590.1	CDY37054	AT2G45660.1	21798944
AT5G47590.1	CDY53886	AT2G45660.1	21798944
AT5G47590.1	CDY60689	AT2G45660.1	21798944
AT5G47590.1	CDY69077	AT2G45660.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra022085.2-P	Field mustard	cytosol	64.29	72.22
CDX84467	Canola	cytosol	31.32	52.78
CDY43629	Canola	cytosol	50.55	48.68
CDY53682	Canola	cytosol	65.38	45.08
CDX80270	Canola	cytosol	62.64	43.35
CDX77719	Canola	cytosol	53.3	42.36
CDY37163	Canola	mitochondrion	45.6	42.35
CDX77721	Canola	cytosol	62.09	42.16
CDY33502	Canola	cytosol	60.99	41.89
CDX87694	Canola	cytosol	43.96	40.82
CDY37166	Canola	cytosol	50.55	40.53
CDY56707	Canola	cytosol	57.69	39.77
CDY41336	Canola	cytosol	57.14	39.1
CDX77779	Canola	cytosol	51.1	36.05
CDY17724	Canola	cytosol	49.45	35.71
CDX77784	Canola	cytosol	47.8	33.85
CDY17722	Canola	cytosol	48.35	33.85
CDX77781	Canola	cytosol	47.8	33.59
CDY33037	Canola	cytosol	62.09	33.53
AT5G47590.1	Thale cress	cytosol	46.7	32.2
CDY43630	Canola	cytosol	18.68	29.31
CDY67243	Canola	cytosol	28.02	28.65
CDY09677	Canola	extracellular	16.48	21.9
CDX90508	Canola	extracellular	15.38	19.86
CDY46005	Canola	mitochondrion	17.03	18.67
CDY32265	Canola	cytosol	26.92	18.49
CDY09681	Canola	cytosol	22.53	17.83
CDY40538	Canola	cytosol	25.82	17.74
CDY09679	Canola	cytosol	23.63	17.27
CDY53640	Canola	cytosol	24.18	16.6
CDX90510	Canola	cytosol	23.63	16.41
CDY50850	Canola	cytosol	23.63	16.23
CDY09683	Canola	cytosol	11.54	15.22
CDX90512	Canola	cytosol	20.33	14.92
CDY50905	Canola	cytosol	23.08	14.84
CDX90513	Canola	cytosol	20.33	14.8
CDY40537	Canola	cytosol	18.13	14.67
CDY32266	Canola	cytosol	18.13	14.67
CDY09703	Canola	plastid	20.33	14.51
CDY09678	Canola	cytosol	21.43	14.29
CDY63876	Canola	cytosol	19.78	13.85
CDX90509	Canola	cytosol	19.78	13.58
CDY46006	Canola	cytosol	13.19	9.56

Protein Annotations

EnsemblPlants:CDY37164	EnsemblPlantsGene:GSBRNA2T00063428001	ProteinID:CDY37164	ProteinID:CDY37164.1	UniParc:UPI0004EDB88E	UniProt:A0A078HII4
MapMan:35.2	:	:	:	:	:

Description

BnaA02g24830DBnaA02g24830D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HII4]

Coordinates

chrLK032393:+:197029..197867

Molecular Weight (calculated)

20292.0 Da

IEP (calculated)

5.097

GRAVY (calculated)

-0.448

Length

182 amino acids

Sequence
(BLAST)

001: MVQSMFRTTR SARRNSRDGS GEETLSDKKN ALGYSGTACL GCDCCEITGV DAKMKDGVLR MIVSRVKVKD HDNKCTLFLP PNTGKSGRYN PDESPWNLAE
101: LEDHPFVVKG RKDSSTSEAT SDGGRLFSLD LPGVCGDDML VLPNENEVKF YGENKEVCEH DESFISNVYL VLVLIRYQVF MF

Best Arabidopsis Sequence Match ( AT5G47590.1 )
(BLAST)

001: MGETKADFRD MSRIPKVREG FYATNNQFQK AGPKGFVQVK VLENDNLYVR VDLPGVPDDA VRYRVDAVRQ KVVFFSGETL NNGKEGVRQY SGTAGLGCDC
101: CEITGVDAKM KDGVLRMILT RVKVVSKAQD NNNNKCTLTV PPFTGQSGIR LEDHPCLVSG RKGALIGVTK AGGGAHFAVD MPGVSPDDVE VYADEKEIRF
201: KAEIKDVYEH DESGRTYLGS VQSPFPALIS NNTIAWDAEF GVLRIAVIPP DDMTTINNKR NPIE

Arabidopsis Description

Heat shock protein HSP20/alpha crystallin family [Source:UniProtKB/TrEMBL;Acc:Q9FGJ8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.