CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra012708.1-P	Field mustard	cytosol	99.6	99.6
CDY09683	Canola	cytosol	40.0	72.46
CDY09681	Canola	cytosol	41.6	45.22
CDY09703	Canola	plastid	42.8	41.96
CDX90512	Canola	cytosol	40.0	40.32
CDX90510	Canola	cytosol	41.6	39.69
CDY09677	Canola	extracellular	21.2	38.69
CDY32266	Canola	cytosol	34.8	38.67
CDY40537	Canola	cytosol	34.4	38.22
CDY09679	Canola	cytosol	37.6	37.75
CDY50850	Canola	cytosol	40.0	37.74
CDY53640	Canola	cytosol	40.0	37.74
CDY32265	Canola	cytosol	39.2	36.98
CDX90508	Canola	extracellular	20.8	36.88
CDY40538	Canola	cytosol	38.0	35.85
CDY63876	Canola	cytosol	36.0	34.62
CDY09678	Canola	cytosol	35.2	32.23
CDY46005	Canola	mitochondrion	21.2	31.93
CDY50905	Canola	cytosol	36.0	31.8
CDX90509	Canola	cytosol	33.6	31.7
CDX77784	Canola	cytosol	29.2	28.4
CDX77779	Canola	cytosol	28.0	27.13
CDY17724	Canola	cytosol	27.2	26.98
CDX77781	Canola	cytosol	27.2	26.25
CDX77719	Canola	cytosol	24.0	26.2
CDY17722	Canola	cytosol	26.8	25.77
CDY43629	Canola	cytosol	19.2	25.4
CDY41336	Canola	cytosol	26.4	24.81
CDX80270	Canola	cytosol	26.0	24.71
CDY53682	Canola	cytosol	26.0	24.62
CDY37163	Canola	mitochondrion	19.2	24.49
CDY56707	Canola	cytosol	25.6	24.24
CDX87694	Canola	cytosol	18.8	23.98
CDX77721	Canola	cytosol	25.2	23.51
CDY37166	Canola	cytosol	20.4	22.47
CDY67243	Canola	cytosol	15.2	21.35
CDY46006	Canola	cytosol	21.2	21.12
CDY37164	Canola	mitochondrion	14.8	20.33
CDY33502	Canola	cytosol	20.8	19.62
CDY33037	Canola	cytosol	24.8	18.4
CDX84467	Canola	cytosol	7.6	17.59
CDY43630	Canola	cytosol	6.4	13.79

Protein Annotations

EnsemblPlants:CDX90513	EnsemblPlantsGene:GSBRNA2T00151138001	InterPro:HSP20	PANTHER:PTHR11527	PANTHER:PTHR11527:SF95	ProteinID:CDX90513
ProteinID:CDX90513.1	UniParc:UPI0004EF0493	MapMan:35.1	:	:	:

Description

BnaA03g42680D

Coordinates

chrLK031863:+:636477..638138

Molecular Weight (calculated)

27466.7 Da

IEP (calculated)

6.676

GRAVY (calculated)

-0.303

Length

250 amino acids

Sequence
(BLAST)

001: MLMVAEGYYA TNNPFQKHGP KGFTETKMIG VRKLFVRTDL PGVGQDEYTA SIDESKKSVT IRTWPPPPGI NIAFHPRIYK TTTHLKCDCC EIGSFTHQVS
101: DGVLRLVITM TPINNQDQIP DVQEEGRHRF LHDTDNYAAE FTGHTLLVHP DLLLPEGSPP RMAYAFKQLP DGSAHVSLDM PGVSKGYFTA EVEDGTRVIV
201: TGRAPAVSHD SNGRFYSAIA ATISNPTGTN LVFTVEGGPE NGVLRLNIRV

Best Arabidopsis Sequence Match ( AT2G03020.1 )
(BLAST)

001: MAMAVPVSAR PQSPEGFYAI NNQFQTNGPK GFSEIKILAN EDMFLRMDLP GVPDEGGLSV YHNRSQETVV VFAKAPKVHT HDSTERRYQT MTGIGCSCCA
101: ISSITTHMSD GVFRVILSKT RIDPHRSPCT VLGCSGFRED LRGTDPNDPA LTGPVLQPHP LAFPQPTMAY ESKQLPNGKL FVRADMPGVP KENFTVSVTN
201: GRVKVTGQAP AVSHDSSGRF YSGDVAMLST PVDIPSRRIK TIAKNGVIRL LIPPF

Arabidopsis Description

Heat shock protein HSP20/alpha crystallin family [Source:UniProtKB/TrEMBL;Acc:Q84X24]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.