CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX74755
CDY27368
CDY37054
CDY53886
CDY60689
CDY69077

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G47590.1	CDX74755	AT2G45660.1	21798944
AT5G47590.1	CDY27368	AT2G45660.1	21798944
AT5G47590.1	CDY37054	AT2G45660.1	21798944
AT5G47590.1	CDY53886	AT2G45660.1	21798944
AT5G47590.1	CDY60689	AT2G45660.1	21798944
AT5G47590.1	CDY69077	AT2G45660.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX80270	Canola	cytosol	82.09	83.65
CDY56707	Canola	cytosol	81.72	82.95
CDY41336	Canola	cytosol	79.85	80.45
CDX77719	Canola	cytosol	67.54	79.04
CDX84467	Canola	cytosol	29.85	74.07
CDX87694	Canola	cytosol	52.99	72.45
CDY37166	Canola	cytosol	61.19	72.25
CDY53682	Canola	cytosol	70.9	71.97
CDY33502	Canola	cytosol	70.15	70.94
CDY37163	Canola	mitochondrion	50.37	68.88
CDY67243	Canola	cytosol	45.15	67.98
CDY43629	Canola	cytosol	46.27	65.61
CDY37164	Canola	mitochondrion	42.16	62.09
CDY43630	Canola	cytosol	26.49	61.21
CDY33037	Canola	cytosol	73.13	58.16
CDX77779	Canola	cytosol	55.22	57.36
CDX77784	Canola	cytosol	54.48	56.81
CDX77781	Canola	cytosol	54.48	56.37
CDY17722	Canola	cytosol	54.48	56.15
CDY17724	Canola	cytosol	52.61	55.95
AT5G47590.1	Thale cress	cytosol	54.48	55.3
CDY09681	Canola	cytosol	25.75	30.0
CDX90510	Canola	cytosol	27.99	28.63
CDY32265	Canola	cytosol	27.61	27.92
CDY53640	Canola	cytosol	27.61	27.92
CDX90509	Canola	cytosol	27.61	27.92
CDY50850	Canola	cytosol	27.61	27.92
CDY09679	Canola	cytosol	25.0	26.91
CDY40538	Canola	cytosol	26.49	26.79
CDY32266	Canola	cytosol	22.39	26.67
CDY40537	Canola	cytosol	22.39	26.67
CDX90512	Canola	cytosol	24.63	26.61
CDY09677	Canola	extracellular	13.43	26.28
CDY09678	Canola	cytosol	26.49	26.01
CDY50905	Canola	cytosol	27.24	25.8
CDX90513	Canola	cytosol	23.51	25.2
CDY09703	Canola	plastid	23.88	25.1
CDX90508	Canola	extracellular	13.06	24.82
CDY63876	Canola	cytosol	23.51	24.23
CDY09683	Canola	cytosol	11.19	21.74
CDY46005	Canola	mitochondrion	13.43	21.69
CDY46006	Canola	cytosol	19.78	21.12

Protein Annotations

EnsemblPlants:CDX77721	EnsemblPlantsGene:GSBRNA2T00128728001	InterPro:HSP20	InterPro:HSP20-like_chaperone	InterPro:IPR008978	PANTHER:PTHR11527
PANTHER:PTHR11527:SF95	ProteinID:CDX77721	ProteinID:CDX77721.1	SEG:seg	SUPFAM:SSF49764	UniParc:UPI0004EE5A4E
MapMan:35.2	:	:	:	:	:

Description

BnaC07g19750D

Coordinates

chrLK031812:+:1298040..1299468

Molecular Weight (calculated)

29664.2 Da

IEP (calculated)

5.364

GRAVY (calculated)

-0.351

Length

268 amino acids

Sequence
(BLAST)

001: MAAYIDMSRV PYIPGLLHAT NHPYQRYGPK GFMEIKVLPN DDLYVRVDLP GVPDDAIRYR VDAVRQKVVF FSGEETLGDG DKAGDVREYS GTAGLGCDCC
101: VITGVDAKMK DGVLRMILSR VKVKDHDNKC SHFLPPNTGK SGRYDLSESL SPYNMVEVED HPFVLKGRKS VLATKGSSDG CHHFSVDLPG VCSDDMFVLP
201: NENEIKFYGE NKEVYEHDES CRIFLGAISK LAFCSDGTPV LSHDIAWDAE FGVLKVRVSP PPPNNNNE

Best Arabidopsis Sequence Match ( AT5G47590.1 )
(BLAST)

001: MGETKADFRD MSRIPKVREG FYATNNQFQK AGPKGFVQVK VLENDNLYVR VDLPGVPDDA VRYRVDAVRQ KVVFFSGETL NNGKEGVRQY SGTAGLGCDC
101: CEITGVDAKM KDGVLRMILT RVKVVSKAQD NNNNKCTLTV PPFTGQSGIR LEDHPCLVSG RKGALIGVTK AGGGAHFAVD MPGVSPDDVE VYADEKEIRF
201: KAEIKDVYEH DESGRTYLGS VQSPFPALIS NNTIAWDAEF GVLRIAVIPP DDMTTINNKR NPIE

Arabidopsis Description

Heat shock protein HSP20/alpha crystallin family [Source:UniProtKB/TrEMBL;Acc:Q9FGJ8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.