Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra000393.1-P | Field mustard | nucleus | 99.53 | 99.53 |
| CDY60689 | Canola | nucleus | 94.84 | 94.84 |
| AT2G45660.1 | Thale cress | nucleus | 94.84 | 94.39 |
| CDY69077 | Canola | nucleus | 94.37 | 94.37 |
| CDX74755 | Canola | nucleus | 93.9 | 93.9 |
| CDY37054 | Canola | nucleus | 91.55 | 91.55 |
| CDY27368 | Canola | nucleus | 91.08 | 91.08 |
| TraesCS1B01G214600.1 | Wheat | nucleus | 23.94 | 82.26 |
| Solyc10g017640.1.1 | Tomato | nucleus | 23.47 | 81.97 |
| CDY10829 | Canola | nucleus | 26.29 | 81.16 |
| CDY41268 | Canola | nucleus | 26.29 | 81.16 |
| CDY00504 | Canola | nucleus | 22.07 | 77.05 |
| Zm00001d047355_P001 | Maize | nucleus | 26.29 | 74.67 |
| KRH00625 | Soybean | nucleus | 69.48 | 70.81 |
| KRH40554 | Soybean | nucleus | 68.54 | 69.19 |
| TraesCS7D01G037000.1 | Wheat | cytosol | 18.78 | 65.57 |
| CDY68007 | Canola | nucleus | 43.66 | 62.0 |
| PGSC0003DMT400026576 | Potato | nucleus | 60.09 | 59.81 |
| GSMUA_Achr2P11820_001 | Banana | nucleus | 38.97 | 59.71 |
| PGSC0003DMT400000028 | Potato | nucleus | 61.5 | 58.48 |
| Zm00001d042315_P001 | Maize | nucleus | 18.78 | 57.14 |
| KRH65189 | Soybean | nucleus | 62.44 | 56.12 |
| GSMUA_Achr1P03630_001 | Banana | nucleus | 54.93 | 55.45 |
| CDY16792 | Canola | nucleus | 49.3 | 54.4 |
| CDY13289 | Canola | nucleus | 55.4 | 54.38 |
| CDX76346 | Canola | nucleus | 55.87 | 53.85 |
| CDY55821 | Canola | nucleus | 55.87 | 53.85 |
| CDX98780 | Canola | nucleus | 54.93 | 53.42 |
| CDX86738 | Canola | nucleus | 54.93 | 53.18 |
| CDY30701 | Canola | nucleus | 52.11 | 53.11 |
| GSMUA_Achr5P10250_001 | Banana | nucleus | 53.52 | 52.78 |
| CDY68754 | Canola | nucleus | 46.01 | 51.04 |
| TraesCS1B01G214500.1 | Wheat | nucleus | 52.11 | 50.92 |
| CDY32614 | Canola | nucleus | 26.29 | 50.45 |
| Zm00001d048474_P001 | Maize | nucleus | 53.99 | 49.57 |
| Os03t0122600-01 | Rice | nucleus | 53.52 | 49.57 |
| TraesCS1D01G203300.2 | Wheat | nucleus | 53.52 | 49.57 |
| Zm00001d027425_P001 | Maize | nucleus | 53.05 | 49.56 |
| TraesCS4B01G346700.1 | Wheat | nucleus | 51.17 | 49.1 |
| TraesCS5A01G515500.1 | Wheat | nucleus | 50.7 | 49.09 |
| OQU93352 | Sorghum | nucleus | 53.05 | 48.5 |
| TraesCS1A01G199600.2 | Wheat | nucleus | 52.11 | 48.26 |
| TraesCS4D01G341700.1 | Wheat | nucleus | 50.23 | 48.2 |
| HORVU1Hr1G051660.10 | Barley | nucleus | 34.74 | 48.05 |
| TraesCS1D01G203400.1 | Wheat | nucleus | 51.64 | 47.62 |
| TraesCS1A01G199900.1 | Wheat | nucleus | 50.23 | 46.93 |
| KXG39016 | Sorghum | nucleus | 49.77 | 46.9 |
| Zm00001d031625_P001 | Maize | nucleus | 17.37 | 46.25 |
| CDY38881 | Canola | nucleus | 44.13 | 46.08 |
| CDY38882 | Canola | nucleus | 46.48 | 45.21 |
| Os10t0536100-01 | Rice | nucleus | 49.3 | 45.06 |
| CDY32613 | Canola | nucleus | 45.54 | 44.29 |
| CDY00505 | Canola | nucleus | 45.07 | 44.04 |
| CDY56935 | Canola | nucleus | 41.78 | 43.63 |
| CDY02145 | Canola | nucleus | 43.19 | 43.6 |
| HORVU6Hr1G002270.1 | Barley | mitochondrion, nucleus | 21.6 | 42.99 |
| CDY66015 | Canola | nucleus | 43.19 | 42.01 |
| CDY55721 | Canola | nucleus | 43.19 | 41.82 |
| CDY41269 | Canola | nucleus | 33.33 | 41.76 |
| CDX94444 | Canola | nucleus | 42.72 | 41.55 |
| CDY52354 | Canola | nucleus | 42.72 | 41.55 |
| HORVU4Hr1G085450.1 | Barley | nucleus | 18.78 | 41.24 |
| CDY10828 | Canola | nucleus | 32.86 | 41.18 |
| TraesCS3A01G434700.1 | Wheat | nucleus | 19.72 | 41.18 |
| TraesCS6B01G017900.1 | Wheat | nucleus | 49.77 | 41.09 |
| TraesCS6D01G014600.1 | Wheat | nucleus | 49.77 | 40.93 |
| TraesCS6A01G011700.1 | Wheat | nucleus | 49.77 | 40.46 |
| CDY42874 | Canola | nucleus | 43.19 | 40.35 |
| Os06t0108500-01 | Rice | nucleus | 39.91 | 39.91 |
| HORVU6Hr1G002330.14 | Barley | nucleus | 35.68 | 39.58 |
| CDY51028 | Canola | nucleus | 42.72 | 39.39 |
| CDY51029 | Canola | nucleus | 32.86 | 38.67 |
| HORVU3Hr1G095240.2 | Barley | nucleus | 28.64 | 38.36 |
| TraesCS3D01G428000.1 | Wheat | nucleus | 28.64 | 38.36 |
| HORVU3Hr1G095200.4 | Barley | nucleus | 29.58 | 37.72 |
| TraesCS3A01G435000.1 | Wheat | nucleus | 29.11 | 37.13 |
| TraesCS3B01G470000.1 | Wheat | nucleus | 29.11 | 37.13 |
| TraesCS3A01G434400.1 | Wheat | nucleus | 28.64 | 36.53 |
| TraesCS3D01G427900.1 | Wheat | nucleus | 28.64 | 36.53 |
| HORVU3Hr1G095080.3 | Barley | plastid | 19.72 | 36.21 |
| TraesCS3B01G469700.1 | Wheat | nucleus | 28.17 | 35.93 |
| CDX94141 | Canola | nucleus | 20.19 | 35.54 |
| TraesCS3D01G427700.1 | Wheat | mitochondrion, nucleus | 27.23 | 34.94 |
| TraesCS4B01G351500.1 | Wheat | nucleus | 26.76 | 34.76 |
| TraesCS3A01G434900.1 | Wheat | nucleus | 27.23 | 34.73 |
| OQU86329 | Sorghum | nucleus | 27.7 | 34.5 |
| Os08t0531900-01 | Rice | nucleus | 28.64 | 33.33 |
| Os01t0922800-01 | Rice | nucleus | 25.35 | 32.93 |
| Zm00001d039913_P002 | Maize | nucleus | 26.76 | 32.76 |
| TraesCS3A01G432900.1 | Wheat | mitochondrion, nucleus | 25.35 | 32.53 |
| EES01980 | Sorghum | nucleus | 24.88 | 32.52 |
| HORVU4Hr1G085370.1 | Barley | nucleus | 16.43 | 32.41 |
| Zm00001d047356_P002 | Maize | nucleus | 17.37 | 31.09 |
| HORVU7Hr1G054390.1 | Barley | nucleus | 21.6 | 29.87 |
| TraesCS5A01G520200.1 | Wheat | nucleus, plastid | 27.23 | 28.71 |
| TraesCS4D01G346300.1 | Wheat | nucleus | 27.7 | 28.5 |
| HORVU7Hr1G054320.2 | Barley | nucleus | 25.35 | 27.84 |
| TraesCS7D01G261900.1 | Wheat | nucleus | 26.76 | 26.03 |
| TraesCS7A01G260900.1 | Wheat | nucleus | 24.88 | 25.85 |
| TraesCS7B01G158900.1 | Wheat | nucleus | 26.29 | 25.81 |
| KXG25532 | Sorghum | nucleus, plastid | 23.94 | 20.32 |
| HORVU3Hr1G095090.1 | Barley | cytosol, mitochondrion, nucleus | 28.17 | 17.8 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | GO:A0A078IVA7 | UniProt:A0A078IVA7 | EnsemblPlants:CDY53886 | ProteinID:CDY53886 |
| ProteinID:CDY53886.1 | ncoils:Coil | GO:GO:0000977 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0045944 | GO:GO:0046983 | EnsemblPlantsGene:GSBRNA2T00011646001 | InterPro:IPR002100 |
| InterPro:IPR002487 | InterPro:IPR036879 | InterPro:MADS_MEF2-like | PFAM:PF00319 | PFAM:PF01486 | PRINTS:PR00404 |
| ScanProsite:PS00350 | PFscan:PS50066 | PFscan:PS51297 | PANTHER:PTHR11945 | PANTHER:PTHR11945:SF341 | SMART:SM00432 |
| SUPFAM:SSF55455 | InterPro:TF_Kbox | InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | UniParc:UPI0004EF0366 | SEG:seg |
Description
BnaA03g56880DBnaA03g56880D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IVA7]
Coordinates
chrLK033247:-:28620..31931
Molecular Weight (calculated)
24324.1 Da
IEP (calculated)
9.481
GRAVY (calculated)
-0.779
Length
213 amino acids
Sequence
(BLAST)
(BLAST)
001: MVRGKTQMKR IENATSRQVT FSKRRNGLLK KAFELSVLCD AEVSLIIFSP KGKLYEFASS NMQDTVDRYL RHTKDRVSSK PVSEENMQHF KHEAANMMKK
101: IEQLEASKRK LLGEGIGSCS IEELQQIEQQ LEKSVKCVRA RKTQVFKEQI VQLKQTEKAL AAENEKLAEK WGSHEIEVWS NKNQESGRGD EDSSPSSEVE
201: TQLFIGLPCS SRK
101: IEQLEASKRK LLGEGIGSCS IEELQQIEQQ LEKSVKCVRA RKTQVFKEQI VQLKQTEKAL AAENEKLAEK WGSHEIEVWS NKNQESGRGD EDSSPSSEVE
201: TQLFIGLPCS SRK
001: MVRGKTQMKR IENATSRQVT FSKRRNGLLK KAFELSVLCD AEVSLIIFSP KGKLYEFASS NMQDTIDRYL RHTKDRVSTK PVSEENMQHL KYEAANMMKK
101: IEQLEASKRK LLGEGIGTCS IEELQQIEQQ LEKSVKCIRA RKTQVFKEQI EQLKQKEKAL AAENEKLSEK WGSHESEVWS NKNQESTGRG DEESSPSSEV
201: ETQLFIGLPC SSRK
101: IEQLEASKRK LLGEGIGTCS IEELQQIEQQ LEKSVKCIRA RKTQVFKEQI EQLKQKEKAL AAENEKLSEK WGSHESEVWS NKNQESTGRG DEESSPSSEV
201: ETQLFIGLPC SSRK
Arabidopsis Description
SOC1SOC1 [Source:UniProtKB/TrEMBL;Acc:A0A178VZL4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.