Subcellular Localization
min:
: max
Winner_takes_all: plastid, cytosol
Predictor Summary:
Predictor Summary:
- plastid 3
- mitochondrion 3
- nucleus 1
- cytosol 2
Predictors | GFP | MS/MS | Papers |
---|---|---|---|
PPI
Inferred from Arabidopsis experimental PPI
Ath locusA | locusB | Ath locusB | Paper |
---|---|---|---|
AT5G04600.1 | CDX71154 | AT5G58720.1 | 21798944 |
AT5G04600.1 | CDY02832 | AT5G58720.1 | 21798944 |
AT5G04600.1 | CDY32688 | AT5G58720.1 | 21798944 |
AT5G04600.1 | CDY61025 | AT5G58720.1 | 21798944 |
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
CDX70212 | Canola | cytosol, plastid | 98.21 | 98.21 |
CDY14147 | Canola | plastid | 95.07 | 95.07 |
CDY04918 | Canola | cytosol, plastid | 92.83 | 94.52 |
AT5G04600.1 | Thale cress | cytosol, plastid | 83.41 | 83.78 |
KRH38103 | Soybean | nucleus | 63.68 | 66.36 |
Solyc11g066630.1.1 | Tomato | nucleus | 43.05 | 66.21 |
KRH71854 | Soybean | nucleus | 61.88 | 65.4 |
PGSC0003DMT400001225 | Potato | nucleus | 59.19 | 61.11 |
VIT_14s0030g01680.t01 | Wine grape | cytosol, mitochondrion, nucleus | 60.54 | 59.47 |
PGSC0003DMT400018358 | Potato | nucleus | 57.85 | 59.45 |
GSMUA_Achr3P18350_001 | Banana | nucleus | 56.95 | 57.99 |
Solyc06g074720.2.1 | Tomato | nucleus | 56.05 | 57.08 |
KXG34111 | Sorghum | cytosol | 54.71 | 56.74 |
TraesCS6D01G014200.1 | Wheat | nucleus | 53.81 | 56.07 |
TraesCS6A01G011400.1 | Wheat | nucleus | 53.36 | 55.61 |
TraesCS6B01G017700.1 | Wheat | nucleus | 53.36 | 55.61 |
TraesCS2A01G178900.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 52.47 | 54.67 |
TraesCS2B01G205700.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 52.02 | 54.46 |
Os08t0412200-01 | Rice | nucleus | 52.02 | 54.21 |
Zm00001d050300_P002 | Maize | mitochondrion, nucleus | 50.67 | 52.56 |
TraesCS2D01G187400.1 | Wheat | mitochondrion, nucleus | 52.02 | 52.02 |
HORVU2Hr1G033820.10 | Barley | cytosol, mitochondrion, nucleus, plastid | 48.88 | 50.93 |
OQU80418 | Sorghum | nucleus | 34.98 | 49.06 |
HORVU6Hr1G002240.2 | Barley | nucleus | 52.91 | 48.96 |
KRH40007 | Soybean | cytosol | 17.94 | 44.94 |
GSMUA_AchrUn_... | Banana | nucleus | 55.61 | 41.61 |
Protein Annotations
MapMan:17.1.2.2.1.7 | Gene3D:3.30.70.330 | GO:A0A078I5Z7 | UniProt:A0A078I5Z7 | EnsemblPlants:CDY44869 | ProteinID:CDY44869 |
ProteinID:CDY44869.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 |
EnsemblPlantsGene:GSBRNA2T00080926001 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nop15_RRM | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 |
PFscan:PS50102 | PANTHER:PTHR44517 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 |
UniParc:UPI0004EB5CDA | SEG:seg | : | : | : | : |
Description
BnaC09g50690DBnaC09g50690D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I5Z7]
Coordinates
chrLK032604:+:165242..166669
Molecular Weight (calculated)
25321.9 Da
IEP (calculated)
10.655
GRAVY (calculated)
-0.707
Length
223 amino acids
Sequence
(BLAST)
(BLAST)
001: MGAKAKKALK KNMKKITASA AASSSSQLAA PKNPKPSADF LPLEGGPARK APATKPIENK ATVLYIGRLP HGFYETEIEA FFTQFGTVKR VRVARNKKTG
101: KSKHFGFIQF EDPEVAEIAA GAMNDYLLLE HMLQVRVIPP EQVKPNLWKG FKCQYKPVDW VQIERKQHNK ERTLEEHRKM LNKVVKRDQK RRKRIEAAGI
201: EYQCPELVGN TQPLPKKIKF SED
101: KSKHFGFIQF EDPEVAEIAA GAMNDYLLLE HMLQVRVIPP EQVKPNLWKG FKCQYKPVDW VQIERKQHNK ERTLEEHRKM LNKVVKRDQK RRKRIEAAGI
201: EYQCPELVGN TQPLPKKIKF SED
001: MGAKAKKALK KNMKKVAASA SSSQLPLPQN PKPSADFLPL EGGPARKAPV TTPPLQNKAT VLYIGRIPHG FYETEIEAFF SQFGTVKRVR VARNKKTGKS
101: KHFGFIQFED PEVAEIAAGA MNDYLLMEHM LKVHVIEPEN VKPNLWRGFK CNFKPVDSVQ IERRQLNKER TLEEHRKMLQ KIVKKDQKRR KRIEAAGIEY
201: ECPELVGNTQ PVPKRIKFSE ED
101: KHFGFIQFED PEVAEIAAGA MNDYLLMEHM LKVHVIEPEN VKPNLWRGFK CNFKPVDSVQ IERRQLNKER TLEEHRKMLQ KIVKKDQKRR KRIEAAGIEY
201: ECPELVGNTQ PVPKRIKFSE ED
Arabidopsis Description
AT5g04600/T32M21_200 [Source:UniProtKB/TrEMBL;Acc:Q9LZ65]
SUBAcon: [plastid,cytosol]
SUBAcon: [plastid,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.