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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid, cytosol

Predictor Summary:
  • plastid 3
  • mitochondrion 3
  • nucleus 1
  • cytosol 2
PPI

Inferred distinct locusB in Crop

Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX70212 Canola cytosol, plastid 98.21 98.21
CDY14147 Canola plastid 95.07 95.07
CDY04918 Canola cytosol, plastid 92.83 94.52
AT5G04600.1 Thale cress cytosol, plastid 83.41 83.78
KRH38103 Soybean nucleus 63.68 66.36
Solyc11g066630.1.1 Tomato nucleus 43.05 66.21
KRH71854 Soybean nucleus 61.88 65.4
PGSC0003DMT400001225 Potato nucleus 59.19 61.11
VIT_14s0030g01680.t01 Wine grape cytosol, mitochondrion, nucleus 60.54 59.47
PGSC0003DMT400018358 Potato nucleus 57.85 59.45
GSMUA_Achr3P18350_001 Banana nucleus 56.95 57.99
Solyc06g074720.2.1 Tomato nucleus 56.05 57.08
KXG34111 Sorghum cytosol 54.71 56.74
TraesCS6D01G014200.1 Wheat nucleus 53.81 56.07
TraesCS6A01G011400.1 Wheat nucleus 53.36 55.61
TraesCS6B01G017700.1 Wheat nucleus 53.36 55.61
TraesCS2A01G178900.1 Wheat cytosol, mitochondrion, nucleus, plastid 52.47 54.67
TraesCS2B01G205700.1 Wheat cytosol, mitochondrion, nucleus, plastid 52.02 54.46
Os08t0412200-01 Rice nucleus 52.02 54.21
Zm00001d050300_P002 Maize mitochondrion, nucleus 50.67 52.56
TraesCS2D01G187400.1 Wheat mitochondrion, nucleus 52.02 52.02
HORVU2Hr1G033820.10 Barley cytosol, mitochondrion, nucleus, plastid 48.88 50.93
OQU80418 Sorghum nucleus 34.98 49.06
HORVU6Hr1G002240.2 Barley nucleus 52.91 48.96
KRH40007 Soybean cytosol 17.94 44.94
GSMUA_AchrUn_... Banana nucleus 55.61 41.61
Protein Annotations
MapMan:17.1.2.2.1.7Gene3D:3.30.70.330GO:A0A078I5Z7UniProt:A0A078I5Z7EnsemblPlants:CDY44869ProteinID:CDY44869
ProteinID:CDY44869.1ncoils:CoilGO:GO:0003674GO:GO:0003676GO:GO:0003723GO:GO:0005488
EnsemblPlantsGene:GSBRNA2T00080926001InterPro:IPR000504InterPro:IPR012677InterPro:Nop15_RRMInterPro:Nucleotide-bd_a/b_plait_sfPFAM:PF00076
PFscan:PS50102PANTHER:PTHR44517InterPro:RBD_domain_sfInterPro:RRM_domSMART:SM00360SUPFAM:SSF54928
UniParc:UPI0004EB5CDASEG:seg::::
Description
BnaC09g50690DBnaC09g50690D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I5Z7]
Coordinates
chrLK032604:+:165242..166669
Molecular Weight (calculated)
25321.9 Da
IEP (calculated)
10.655
GRAVY (calculated)
-0.707
Length
223 amino acids
Sequence
(BLAST)
001: MGAKAKKALK KNMKKITASA AASSSSQLAA PKNPKPSADF LPLEGGPARK APATKPIENK ATVLYIGRLP HGFYETEIEA FFTQFGTVKR VRVARNKKTG
101: KSKHFGFIQF EDPEVAEIAA GAMNDYLLLE HMLQVRVIPP EQVKPNLWKG FKCQYKPVDW VQIERKQHNK ERTLEEHRKM LNKVVKRDQK RRKRIEAAGI
201: EYQCPELVGN TQPLPKKIKF SED
Best Arabidopsis Sequence Match ( AT5G04600.1 )
(BLAST)
001: MGAKAKKALK KNMKKVAASA SSSQLPLPQN PKPSADFLPL EGGPARKAPV TTPPLQNKAT VLYIGRIPHG FYETEIEAFF SQFGTVKRVR VARNKKTGKS
101: KHFGFIQFED PEVAEIAAGA MNDYLLMEHM LKVHVIEPEN VKPNLWRGFK CNFKPVDSVQ IERRQLNKER TLEEHRKMLQ KIVKKDQKRR KRIEAAGIEY
201: ECPELVGNTQ PVPKRIKFSE ED
Arabidopsis Description
AT5g04600/T32M21_200 [Source:UniProtKB/TrEMBL;Acc:Q9LZ65]
SUBAcon: [plastid,cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.