Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d017254_P002 | |
| Zm00001d039321_P008 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G04600.1 | Zm00001d017254_P002 | AT5G58720.1 | 21798944 |
| AT5G04600.1 | Zm00001d039321_P008 | AT5G58720.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KXG34111 | Sorghum | cytosol | 85.58 | 85.58 |
| OQU80418 | Sorghum | nucleus | 57.21 | 77.36 |
| Os08t0412200-01 | Rice | nucleus | 75.35 | 75.7 |
| TraesCS6D01G014200.1 | Wheat | nucleus | 74.42 | 74.77 |
| HORVU2Hr1G033820.10 | Barley | cytosol, mitochondrion, nucleus, plastid | 74.42 | 74.77 |
| TraesCS6A01G011400.1 | Wheat | nucleus | 73.95 | 74.3 |
| TraesCS6B01G017700.1 | Wheat | nucleus | 73.95 | 74.3 |
| TraesCS2B01G205700.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 72.56 | 73.24 |
| TraesCS2A01G178900.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 72.09 | 72.43 |
| TraesCS2D01G187400.1 | Wheat | mitochondrion, nucleus | 73.02 | 70.4 |
| HORVU6Hr1G002240.2 | Barley | nucleus | 73.95 | 65.98 |
| Solyc11g066630.1.1 | Tomato | nucleus | 43.26 | 64.14 |
| KRH38103 | Soybean | nucleus | 57.21 | 57.48 |
| GSMUA_Achr3P18350_001 | Banana | nucleus | 58.14 | 57.08 |
| KRH71854 | Soybean | nucleus | 55.81 | 56.87 |
| PGSC0003DMT400018358 | Potato | nucleus | 56.74 | 56.22 |
| Solyc06g074720.2.1 | Tomato | nucleus | 57.21 | 56.16 |
| PGSC0003DMT400001225 | Potato | nucleus | 55.81 | 55.56 |
| VIT_14s0030g01680.t01 | Wine grape | cytosol, mitochondrion, nucleus | 57.67 | 54.63 |
| CDY04918 | Canola | cytosol, plastid | 51.63 | 50.68 |
| Bra028783.1-P | Field mustard | cytosol, plastid | 51.63 | 50.68 |
| CDY44869 | Canola | cytosol, plastid | 52.56 | 50.67 |
| CDY14147 | Canola | plastid | 51.63 | 49.78 |
| CDX70212 | Canola | cytosol, plastid | 51.63 | 49.78 |
| Bra009440.1-P | Field mustard | cytosol, plastid | 51.63 | 49.78 |
| AT5G04600.1 | Thale cress | cytosol, plastid | 51.16 | 49.55 |
| KRH40007 | Soybean | cytosol | 18.14 | 43.82 |
| GSMUA_AchrUn_... | Banana | nucleus | 59.07 | 42.62 |
Protein Annotations
| MapMan:17.1.2.2.1.7 | Gene3D:3.30.70.330 | UniProt:A0A1D6Q0W5 | ProteinID:AQK52275.1 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0005730 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFscan:PS50102 |
| PANTHER:PTHR44517 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI000842E115 |
| EnsemblPlantsGene:Zm00001d050300 | EnsemblPlants:Zm00001d050300_P002 | EnsemblPlants:Zm00001d050300_T002 | : | : | : |
Description
RNA-binding (RRM/RBD/RNP motifs) family protein
Coordinates
chr4:-:79804798..79808322
Molecular Weight (calculated)
24658.2 Da
IEP (calculated)
10.853
GRAVY (calculated)
-0.705
Length
215 amino acids
Sequence
(BLAST)
(BLAST)
001: MGMRDKKRNQ KRVLARRTAA PRPGEGKDFL PLEGGPGKKH LKVQQPEEPE NTATIVYIGH IPHGFYEDEM KGFFKQFGDI KRLRIARNRK TGKSKHYGFI
101: EFENPAVAKV VADEMNNYLL FERTLQVALV EPEKVHPKLW KGVRRGFIPV DRVAIERKRH NKDKTVAEHK KMVEGIVKRD GKRRKRIKAA GIDYECPALV
201: SKPFVAAFSL FNGIS
101: EFENPAVAKV VADEMNNYLL FERTLQVALV EPEKVHPKLW KGVRRGFIPV DRVAIERKRH NKDKTVAEHK KMVEGIVKRD GKRRKRIKAA GIDYECPALV
201: SKPFVAAFSL FNGIS
001: MGAKAKKALK KNMKKVAASA SSSQLPLPQN PKPSADFLPL EGGPARKAPV TTPPLQNKAT VLYIGRIPHG FYETEIEAFF SQFGTVKRVR VARNKKTGKS
101: KHFGFIQFED PEVAEIAAGA MNDYLLMEHM LKVHVIEPEN VKPNLWRGFK CNFKPVDSVQ IERRQLNKER TLEEHRKMLQ KIVKKDQKRR KRIEAAGIEY
201: ECPELVGNTQ PVPKRIKFSE ED
101: KHFGFIQFED PEVAEIAAGA MNDYLLMEHM LKVHVIEPEN VKPNLWRGFK CNFKPVDSVQ IERRQLNKER TLEEHRKMLQ KIVKKDQKRR KRIEAAGIEY
201: ECPELVGNTQ PVPKRIKFSE ED
Arabidopsis Description
AT5g04600/T32M21_200 [Source:UniProtKB/TrEMBL;Acc:Q9LZ65]
SUBAcon: [plastid,cytosol]
SUBAcon: [plastid,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.