Factsheet for HORVU6Hr1G002240.2

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
MultiLoc:	nucleus
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU3Hr1G030600.8

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G04600.1	HORVU3Hr1G030600.8	AT5G58720.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G014200.1	Wheat	nucleus	85.48	96.26
TraesCS6B01G017700.1	Wheat	nucleus	85.48	96.26
TraesCS6A01G011400.1	Wheat	nucleus	85.06	95.79
HORVU2Hr1G033820.10	Barley	cytosol, mitochondrion, nucleus, plastid	74.69	84.11
Os08t0412200-01	Rice	nucleus	73.03	82.24
KXG34111	Sorghum	cytosol	72.61	81.4
Zm00001d050300_P002	Maize	mitochondrion, nucleus	65.98	73.95
OQU80418	Sorghum	nucleus	48.55	73.58
Solyc11g066630.1.1	Tomato	nucleus	39.0	64.83
GSMUA_Achr3P18350_001	Banana	nucleus	53.53	58.9
KRH38103	Soybean	nucleus	50.62	57.01
KRH71854	Soybean	nucleus	49.79	56.87
VIT_14s0030g01680.t01	Wine grape	cytosol, mitochondrion, nucleus	52.28	55.51
PGSC0003DMT400018358	Potato	nucleus	49.38	54.84
PGSC0003DMT400001225	Potato	nucleus	48.13	53.7
CDY04918	Canola	cytosol, plastid	48.55	53.42
Bra028783.1-P	Field mustard	cytosol, plastid	48.55	53.42
CDX70212	Canola	cytosol, plastid	49.38	53.36
Bra009440.1-P	Field mustard	cytosol, plastid	49.38	53.36
CDY44869	Canola	cytosol, plastid	48.96	52.91
CDY14147	Canola	plastid	48.96	52.91
Solyc06g074720.2.1	Tomato	nucleus	47.3	52.05
AT5G04600.1	Thale cress	cytosol, plastid	47.3	51.35
GSMUA_AchrUn_...	Banana	nucleus	53.53	43.29
KRH40007	Soybean	cytosol	14.11	38.2

Protein Annotations

EnsemblPlants:HORVU6Hr1G002240.2	EnsemblPlantsGene:HORVU6Hr1G002240	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:RBD_domain_sf	InterPro:RRM_dom
PFAM:PF00076	PFscan:PS50102	SEG:seg	SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI000B4672F2
UniProt:A0A287T5B3	MapMan:17.1.2.2.1.7	:	:	:	:

Description

No Description!

Coordinates

chrchr6H:+:6146037..6149392

Molecular Weight (calculated)

27543.4 Da

IEP (calculated)

10.513

GRAVY (calculated)

-0.691

Length

241 amino acids

Sequence
(BLAST)

001: MGLRDKKRNQ RRVLSRRSAG PKTGDGKDFL PLEGKEQRIR EKKQAEEPEN TATVLYIGHV PHGFYEDQMQ GLSPSVELRE AGSGLNIPSL LVWLFPAGFF
101: QQFGAVKRVR VARNRKTGKS KHYGFIEFEN PEVAKIVADE MNNYLLFEHT LQIALVPPEK VHAKLWKGVR KGFIPVDRVA IERNRLSKDK TVEEHKKMVE
201: GIVKRDEKRR KRIKAAGIDY ECPALIGSVQ PSAKKIKFDE D

Best Arabidopsis Sequence Match ( AT5G04600.1 )
(BLAST)

001: MGAKAKKALK KNMKKVAASA SSSQLPLPQN PKPSADFLPL EGGPARKAPV TTPPLQNKAT VLYIGRIPHG FYETEIEAFF SQFGTVKRVR VARNKKTGKS
101: KHFGFIQFED PEVAEIAAGA MNDYLLMEHM LKVHVIEPEN VKPNLWRGFK CNFKPVDSVQ IERRQLNKER TLEEHRKMLQ KIVKKDQKRR KRIEAAGIEY
201: ECPELVGNTQ PVPKRIKFSE ED

Arabidopsis Description

AT5g04600/T32M21_200 [Source:UniProtKB/TrEMBL;Acc:Q9LZ65]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.