CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 3
mitochondrion 2
nucleus 1
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX71154
CDY02832
CDY32688
CDY61025

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G04600.1	CDX71154	AT5G58720.1	21798944
AT5G04600.1	CDY02832	AT5G58720.1	21798944
AT5G04600.1	CDY32688	AT5G58720.1	21798944
AT5G04600.1	CDY61025	AT5G58720.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra028783.1-P	Field mustard	cytosol, plastid	98.63	98.63
CDY14147	Canola	plastid	97.26	95.52
CDY44869	Canola	cytosol, plastid	94.52	92.83
CDX70212	Canola	cytosol, plastid	94.06	92.38
AT5G04600.1	Thale cress	cytosol, plastid	84.93	83.78
Solyc11g066630.1.1	Tomato	nucleus	44.29	66.9
KRH38103	Soybean	nucleus	64.38	65.89
KRH71854	Soybean	nucleus	62.56	64.93
PGSC0003DMT400001225	Potato	nucleus	60.73	61.57
VIT_14s0030g01680.t01	Wine grape	cytosol, mitochondrion, nucleus	62.56	60.35
PGSC0003DMT400018358	Potato	nucleus	58.9	59.45
Solyc06g074720.2.1	Tomato	nucleus	57.08	57.08
TraesCS6D01G014200.1	Wheat	nucleus	55.25	56.54
GSMUA_Achr3P18350_001	Banana	nucleus	56.16	56.16
TraesCS6B01G017700.1	Wheat	nucleus	54.79	56.07
TraesCS6A01G011400.1	Wheat	nucleus	54.79	56.07
KXG34111	Sorghum	cytosol	54.79	55.81
TraesCS2A01G178900.1	Wheat	cytosol, mitochondrion, nucleus, plastid	52.97	54.21
TraesCS2B01G205700.1	Wheat	cytosol, mitochondrion, nucleus, plastid	52.51	53.99
Os08t0412200-01	Rice	nucleus	52.51	53.74
Zm00001d050300_P002	Maize	mitochondrion, nucleus	50.68	51.63
TraesCS2D01G187400.1	Wheat	mitochondrion, nucleus	52.51	51.57
HORVU2Hr1G033820.10	Barley	cytosol, mitochondrion, nucleus, plastid	49.32	50.47
OQU80418	Sorghum	nucleus	35.62	49.06
HORVU6Hr1G002240.2	Barley	nucleus	53.42	48.55
KRH40007	Soybean	cytosol	17.35	42.7
GSMUA_AchrUn_...	Banana	nucleus	55.71	40.94

Protein Annotations

EnsemblPlants:CDY04918	EnsemblPlantsGene:GSBRNA2T00119640001	Gene3D:3.30.70.330	GO:A0A078EZ43	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nop15_RRM	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:RBD_domain_sf
InterPro:RRM_dom	PANTHER:PTHR44517	PFAM:PF00076	PFscan:PS50102	ProteinID:CDY04918	ProteinID:CDY04918.1
SEG:seg	SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI0004EF1C96	MapMan:17.1.2.2.1.7	:

Description

BnaAnng01000D

Coordinates

chrLK031958:+:705754..707506

Molecular Weight (calculated)

24887.5 Da

IEP (calculated)

10.728

GRAVY (calculated)

-0.679

Length

219 amino acids

Sequence
(BLAST)

001: MGAKAKKALK KNMKKISASS SSQLAVPQNP KPSADFLPLG GGPARKAPVT KPLESKATVL YIGRLPHGFY ETEIEAFFTQ FGTVKRVRVA RNKKTGKSKH
101: FGFIQFEDPE VAEIAAGAMN DYLLLEHMLQ VRVIPPEHVK PNLWKGFKCQ YKPVDWVQIE RKQHNKERTL EGHRKMLNKV VKRDQKRRKR IEAAGIDYQC
201: PELVGNTQPL PKKIKFSED

Best Arabidopsis Sequence Match ( AT5G04600.1 )
(BLAST)

001: MGAKAKKALK KNMKKVAASA SSSQLPLPQN PKPSADFLPL EGGPARKAPV TTPPLQNKAT VLYIGRIPHG FYETEIEAFF SQFGTVKRVR VARNKKTGKS
101: KHFGFIQFED PEVAEIAAGA MNDYLLMEHM LKVHVIEPEN VKPNLWRGFK CNFKPVDSVQ IERRQLNKER TLEEHRKMLQ KIVKKDQKRR KRIEAAGIEY
201: ECPELVGNTQ PVPKRIKFSE ED

Arabidopsis Description

AT5g04600/T32M21_200 [Source:UniProtKB/TrEMBL;Acc:Q9LZ65]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.