Subcellular Localization
min:
: max
Winner_takes_all: plastid, cytosol
Predictor Summary:
Predictor Summary:
- plastid 3
- mitochondrion 2
- nucleus 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra028783.1-P | Field mustard | cytosol, plastid | 84.23 | 85.39 |
| CDY04918 | Canola | cytosol, plastid | 83.78 | 84.93 |
| CDY44869 | Canola | cytosol, plastid | 83.78 | 83.41 |
| CDX70212 | Canola | cytosol, plastid | 83.33 | 82.96 |
| Bra009440.1-P | Field mustard | cytosol, plastid | 83.33 | 82.96 |
| CDY14147 | Canola | plastid | 81.98 | 81.61 |
| KRH38103 | Soybean | nucleus | 63.06 | 65.42 |
| KRH71854 | Soybean | nucleus | 60.81 | 63.98 |
| Solyc11g066630.1.1 | Tomato | nucleus | 40.09 | 61.38 |
| VIT_14s0030g01680.t01 | Wine grape | cytosol, mitochondrion, nucleus | 60.36 | 59.03 |
| PGSC0003DMT400001225 | Potato | nucleus | 56.76 | 58.33 |
| GSMUA_Achr3P18350_001 | Banana | nucleus | 57.21 | 57.99 |
| PGSC0003DMT400018358 | Potato | nucleus | 56.31 | 57.6 |
| Solyc06g074720.2.1 | Tomato | nucleus | 54.5 | 55.25 |
| TraesCS6B01G017700.1 | Wheat | nucleus | 52.7 | 54.67 |
| TraesCS6D01G014200.1 | Wheat | nucleus | 52.25 | 54.21 |
| KXG34111 | Sorghum | cytosol | 52.25 | 53.95 |
| Os08t0412200-01 | Rice | nucleus | 51.8 | 53.74 |
| TraesCS6A01G011400.1 | Wheat | nucleus | 51.8 | 53.74 |
| TraesCS2A01G178900.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 50.9 | 52.8 |
| TraesCS2B01G205700.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 50.45 | 52.58 |
| Zm00001d050300_P002 | Maize | mitochondrion, nucleus | 49.55 | 51.16 |
| TraesCS2D01G187400.1 | Wheat | mitochondrion, nucleus | 50.9 | 50.67 |
| HORVU2Hr1G033820.10 | Barley | cytosol, mitochondrion, nucleus, plastid | 48.2 | 50.0 |
| OQU80418 | Sorghum | nucleus | 35.59 | 49.69 |
| KRH40007 | Soybean | cytosol | 19.37 | 48.31 |
| HORVU6Hr1G002240.2 | Barley | nucleus | 51.35 | 47.3 |
| GSMUA_AchrUn_... | Banana | nucleus | 55.86 | 41.61 |
Protein Annotations
| MapMan:17.1.2.2.1.7 | Gene3D:3.30.70.330 | EntrezGene:830337 | UniProt:A0A178UDT5 | ProteinID:AED90763.1 | EMBL:AF378899 |
| ArrayExpress:AT5G04600 | EnsemblPlantsGene:AT5G04600 | RefSeq:AT5G04600 | TAIR:AT5G04600 | RefSeq:AT5G04600-TAIR-G | EnsemblPlants:AT5G04600.1 |
| TAIR:AT5G04600.1 | EMBL:AY055787 | EMBL:AY063822 | EMBL:AY123013 | ProteinID:CAB85566.1 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0005730 | GO:GO:0008150 | InterPro:IPR000504 | InterPro:IPR012677 | RefSeq:NP_196080.1 |
| InterPro:Nop15_RRM | InterPro:Nucleotide-bd_a/b_plait_sf | ProteinID:OAO91302.1 | PFAM:PF00076 | PO:PO:0000013 | PO:PO:0000037 |
| PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 |
| PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 |
| PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 |
| PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 |
| PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 |
| PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PFscan:PS50102 | PANTHER:PTHR44517 |
| UniProt:Q9LZ65 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI00000A7EE1 |
| SEG:seg | : | : | : | : | : |
Description
AT5g04600/T32M21_200 [Source:UniProtKB/TrEMBL;Acc:Q9LZ65]
Coordinates
chr5:+:1323574..1326984
Molecular Weight (calculated)
25263.8 Da
IEP (calculated)
10.541
GRAVY (calculated)
-0.680
Length
222 amino acids
Sequence
(BLAST)
(BLAST)
001: MGAKAKKALK KNMKKVAASA SSSQLPLPQN PKPSADFLPL EGGPARKAPV TTPPLQNKAT VLYIGRIPHG FYETEIEAFF SQFGTVKRVR VARNKKTGKS
101: KHFGFIQFED PEVAEIAAGA MNDYLLMEHM LKVHVIEPEN VKPNLWRGFK CNFKPVDSVQ IERRQLNKER TLEEHRKMLQ KIVKKDQKRR KRIEAAGIEY
201: ECPELVGNTQ PVPKRIKFSE ED
101: KHFGFIQFED PEVAEIAAGA MNDYLLMEHM LKVHVIEPEN VKPNLWRGFK CNFKPVDSVQ IERRQLNKER TLEEHRKMLQ KIVKKDQKRR KRIEAAGIEY
201: ECPELVGNTQ PVPKRIKFSE ED
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.