Factsheet for GSMUA_AchrUn_randomP18940_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr7P14310_001
GSMUA_Achr7P14320_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G04600.1	GSMUA_Achr7P14310_001	AT5G58720.1	21798944
AT5G04600.1	GSMUA_Achr7P14320_001	AT5G58720.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr3P18350_001	Banana	nucleus	66.11	89.95
Solyc11g066630.1.1	Tomato	nucleus	33.89	69.66
KXG34111	Sorghum	cytosol	46.31	64.19
PGSC0003DMT400018358	Potato	nucleus	45.97	63.13
KRH38103	Soybean	nucleus	44.63	62.15
VIT_14s0030g01680.t01	Wine grape	cytosol, mitochondrion, nucleus	47.32	62.11
TraesCS2A01G178900.1	Wheat	cytosol, mitochondrion, nucleus, plastid	44.3	61.68
PGSC0003DMT400001225	Potato	nucleus	44.63	61.57
TraesCS6D01G014200.1	Wheat	nucleus	43.96	61.22
TraesCS6A01G011400.1	Wheat	nucleus	43.96	61.22
KRH71854	Soybean	nucleus	43.29	61.14
TraesCS2B01G205700.1	Wheat	cytosol, mitochondrion, nucleus, plastid	43.62	61.03
TraesCS6B01G017700.1	Wheat	nucleus	43.62	60.75
Os08t0412200-01	Rice	nucleus	43.62	60.75
Solyc06g074720.2.1	Tomato	nucleus	43.96	59.82
Zm00001d050300_P002	Maize	mitochondrion, nucleus	42.62	59.07
TraesCS2D01G187400.1	Wheat	mitochondrion, nucleus	43.62	58.3
HORVU2Hr1G033820.10	Barley	cytosol, mitochondrion, nucleus, plastid	40.94	57.01
AT5G04600.1	Thale cress	cytosol, plastid	41.61	55.86
CDY04918	Canola	cytosol, plastid	40.94	55.71
Bra028783.1-P	Field mustard	cytosol, plastid	40.94	55.71
CDY44869	Canola	cytosol, plastid	41.61	55.61
Bra009440.1-P	Field mustard	cytosol, plastid	41.28	55.16
CDX70212	Canola	cytosol, plastid	41.28	55.16
CDY14147	Canola	plastid	40.94	54.71
HORVU6Hr1G002240.2	Barley	nucleus	43.29	53.53
OQU80418	Sorghum	nucleus	28.52	53.46
KRH40007	Soybean	cytosol	13.42	44.94

Protein Annotations

EnsemblPlants:GSMUA_AchrUn_randomP18940_001	EnsemblPlants:GSMUA_AchrUn_randomT18940_001	EnsemblPlantsGene:GSMUA_AchrUn_randomG18940_001	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:RBD_domain_sf
InterPro:RRM_dom	PANTHER:PTHR44517	PFAM:PF00076	PFscan:PS50102	SEG:seg	SMART:SM00360
SUPFAM:SSF54928	UniParc:UPI000295433A	UniProt:M0UAF3	MapMan:17.1.2.2.1.7	:	:

Description

RNA recognition motif containing protein, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG18940_001]

Coordinates

chrchrUn_random:-:91166170..91171495

Molecular Weight (calculated)

34310.2 Da

IEP (calculated)

10.134

GRAVY (calculated)

-0.800

Length

298 amino acids

Sequence
(BLAST)

001: MLIEPDYPFA NSSPESIKET LNLNNTILPP RALLLGLPSS PSSIRVSSSH HHRRAAATLP TLPTAFEEKE SSRNSSEMGV KAKKALKKKL KKTNSSQLSI
101: SRSRNESSDF LPLEGGPGMK ITQEEDEPIK NTATVLYIGH IPHGFYEEQM EGFFKQFGKI KRLRIARNRK TGKSKHYGFL EFENPEVAKV VADEIHNYLL
201: FEHNLQIHLI LPERVHPKLW RGVNWRYKPL NWTEIARKQH NKDRTVEEQQ QMIQGIQKRD KKRRNRIKAA GIDYECPDLV GLIQPAAKKI KFDEEEEE

Best Arabidopsis Sequence Match ( AT5G04600.1 )
(BLAST)

001: MGAKAKKALK KNMKKVAASA SSSQLPLPQN PKPSADFLPL EGGPARKAPV TTPPLQNKAT VLYIGRIPHG FYETEIEAFF SQFGTVKRVR VARNKKTGKS
101: KHFGFIQFED PEVAEIAAGA MNDYLLMEHM LKVHVIEPEN VKPNLWRGFK CNFKPVDSVQ IERRQLNKER TLEEHRKMLQ KIVKKDQKRR KRIEAAGIEY
201: ECPELVGNTQ PVPKRIKFSE ED

Arabidopsis Description

AT5g04600/T32M21_200 [Source:UniProtKB/TrEMBL;Acc:Q9LZ65]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.