Factsheet for PGSC0003DMT400018358

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
cytosol 1
nucleus 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400010646

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G04600.1	PGSC0003DMT400010646	AT5G58720.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g074720.2.1	Tomato	nucleus	92.63	91.78
PGSC0003DMT400001225	Potato	nucleus	86.64	87.04
VIT_14s0030g01680.t01	Wine grape	cytosol, mitochondrion, nucleus	72.81	69.6
KRH71854	Soybean	nucleus	67.28	69.19
KRH38103	Soybean	nucleus	68.2	69.16
GSMUA_Achr3P18350_001	Banana	nucleus	62.21	61.64
KXG34111	Sorghum	cytosol	60.37	60.93
CDY04918	Canola	cytosol, plastid	59.45	58.9
Bra028783.1-P	Field mustard	cytosol, plastid	58.99	58.45
Bra009440.1-P	Field mustard	cytosol, plastid	59.45	57.85
CDX70212	Canola	cytosol, plastid	59.45	57.85
CDY14147	Canola	plastid	59.45	57.85
CDY44869	Canola	cytosol, plastid	59.45	57.85
Os08t0412200-01	Rice	nucleus	56.22	57.01
Zm00001d050300_P002	Maize	mitochondrion, nucleus	56.22	56.74
AT5G04600.1	Thale cress	cytosol, plastid	57.6	56.31
TraesCS2B01G205700.1	Wheat	cytosol, mitochondrion, nucleus, plastid	54.84	55.87
TraesCS6A01G011400.1	Wheat	nucleus	54.84	55.61
TraesCS6D01G014200.1	Wheat	nucleus	54.84	55.61
TraesCS2A01G178900.1	Wheat	cytosol, mitochondrion, nucleus, plastid	54.38	55.14
TraesCS6B01G017700.1	Wheat	nucleus	54.38	55.14
OQU80418	Sorghum	nucleus	40.09	54.72
HORVU2Hr1G033820.10	Barley	cytosol, mitochondrion, nucleus, plastid	52.07	52.8
TraesCS2D01G187400.1	Wheat	mitochondrion, nucleus	53.46	52.02
HORVU6Hr1G002240.2	Barley	nucleus	54.84	49.38
KRH40007	Soybean	cytosol	18.89	46.07
GSMUA_AchrUn_...	Banana	nucleus	63.13	45.97

Protein Annotations

EntrezGene:102594986	MapMan:17.1.2.2.1.7	Gene3D:3.30.70.330	ProteinID:ABB87134	ProteinID:ABB87134.1	ProteinID:AFW90620
ProteinID:AFW90620.1	EMBL:DQ241864	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488
InterPro:IPR000504	InterPro:IPR012677	EMBL:JX576264	UniProt:M1AAH1	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076
EnsemblPlantsGene:PGSC0003DMG400007128	PGSC:PGSC0003DMG400007128	EnsemblPlants:PGSC0003DMT400018358	PFscan:PS50102	PANTHER:PTHR44517	InterPro:RBD_domain_sf
InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI000295F62B	RefSeq:XP_006347213.1	RefSeq:XP_006347214.1
SEG:seg	:	:	:	:	:

Description

RNA binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400007128]

Coordinates

chr6:+:55249433..55253566

Molecular Weight (calculated)

25201.7 Da

IEP (calculated)

10.601

GRAVY (calculated)

-0.780

Length

217 amino acids

Sequence
(BLAST)

001: MGVKARKKAI TKKLKKGASD FSASSASKDE AREFLPLEGG PAQKLPKTEV RENKATVLYI GRIPHGFYEN EMEGFFKQFG TIKRLRIARN KKTGKSKHFG
101: FIEFESPEVT KVVAETMHNY LLFEHLLQVQ LIRPEHVHPS LWKGVNRWYK PLDWVKIERK RQDKERTLDD HKKLVEGILK RDKKRRKRIE AAGIDYECPE
201: MVGSIQAAPK KIRFDAD

Best Arabidopsis Sequence Match ( AT5G04600.1 )
(BLAST)

001: MGAKAKKALK KNMKKVAASA SSSQLPLPQN PKPSADFLPL EGGPARKAPV TTPPLQNKAT VLYIGRIPHG FYETEIEAFF SQFGTVKRVR VARNKKTGKS
101: KHFGFIQFED PEVAEIAAGA MNDYLLMEHM LKVHVIEPEN VKPNLWRGFK CNFKPVDSVQ IERRQLNKER TLEEHRKMLQ KIVKKDQKRR KRIEAAGIEY
201: ECPELVGNTQ PVPKRIKFSE ED

Arabidopsis Description

AT5g04600/T32M21_200 [Source:UniProtKB/TrEMBL;Acc:Q9LZ65]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.