Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 3
- mitochondrion 3
Predictors | GFP | MS/MS | Papers |
---|---|---|---|
PPI
Inferred distinct locusB in Crop
locusB | locations |
---|---|
OQU86087 |
Inferred from Arabidopsis experimental PPI
Ath locusA | locusB | Ath locusB | Paper |
---|---|---|---|
AT5G04600.1 | OQU86087 | AT5G58720.1 | 21798944 |
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
KXG34111 | Sorghum | cytosol | 81.76 | 60.47 |
Zm00001d050300_P002 | Maize | mitochondrion, nucleus | 77.36 | 57.21 |
TraesCS6A01G011400.1 | Wheat | nucleus | 73.58 | 54.67 |
TraesCS6D01G014200.1 | Wheat | nucleus | 72.96 | 54.21 |
TraesCS6B01G017700.1 | Wheat | nucleus | 72.96 | 54.21 |
Os08t0412200-01 | Rice | nucleus | 71.07 | 52.8 |
HORVU2Hr1G033820.10 | Barley | cytosol, mitochondrion, nucleus, plastid | 71.07 | 52.8 |
TraesCS2B01G205700.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 69.81 | 52.11 |
TraesCS2A01G178900.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 69.81 | 51.87 |
TraesCS2D01G187400.1 | Wheat | mitochondrion, nucleus | 70.44 | 50.22 |
HORVU6Hr1G002240.2 | Barley | nucleus | 73.58 | 48.55 |
Solyc11g066630.1.1 | Tomato | nucleus | 44.03 | 48.28 |
KRH38103 | Soybean | nucleus | 55.35 | 41.12 |
KRH71854 | Soybean | nucleus | 53.46 | 40.28 |
PGSC0003DMT400018358 | Potato | nucleus | 54.72 | 40.09 |
Solyc06g074720.2.1 | Tomato | nucleus | 54.09 | 39.27 |
VIT_14s0030g01680.t01 | Wine grape | cytosol, mitochondrion, nucleus | 55.97 | 39.21 |
PGSC0003DMT400001225 | Potato | nucleus | 52.83 | 38.89 |
GSMUA_Achr3P18350_001 | Banana | nucleus | 52.83 | 38.36 |
CDY04918 | Canola | cytosol, plastid | 49.06 | 35.62 |
AT5G04600.1 | Thale cress | cytosol, plastid | 49.69 | 35.59 |
Bra028783.1-P | Field mustard | cytosol, plastid | 48.43 | 35.16 |
CDY44869 | Canola | cytosol, plastid | 49.06 | 34.98 |
Bra009440.1-P | Field mustard | cytosol, plastid | 48.43 | 34.53 |
CDY14147 | Canola | plastid | 48.43 | 34.53 |
CDX70212 | Canola | cytosol, plastid | 48.43 | 34.53 |
GSMUA_AchrUn_... | Banana | nucleus | 53.46 | 28.52 |
KRH40007 | Soybean | cytosol | 15.09 | 26.97 |
Protein Annotations
EnsemblPlants:OQU80418 | EnsemblPlantsGene:SORBI_3007G124900 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf | PANTHER:PTHR44517 | ProteinID:OQU80418 | ProteinID:OQU80418.1 |
SUPFAM:SSF54928 | UniParc:UPI000B8BA170 | UniProt:A0A1Z5R9J1 | MapMan:17.1.2.2.1.7 | : | : |
Description
hypothetical protein
Coordinates
chr7:-:53466699..53469607
Molecular Weight (calculated)
18425.5 Da
IEP (calculated)
9.893
GRAVY (calculated)
-0.562
Length
159 amino acids
Sequence
(BLAST)
(BLAST)
001: MGMRDKKWNQ KLVLARRRGQ HPEEPENTAK VVYIGHIPHG FYEDEKQGKS KHYGFIEFES PVVSKIVADE MNNYLLFEHT LQVSLVLPEK VHPKLWKGVR
101: HGFIPIDRVA IEQMRHNKMV EGIVKQDEKR RKRIKAAGID YECPALRYEL LAAAVPGTV
101: HGFIPIDRVA IEQMRHNKMV EGIVKQDEKR RKRIKAAGID YECPALRYEL LAAAVPGTV
001: MGAKAKKALK KNMKKVAASA SSSQLPLPQN PKPSADFLPL EGGPARKAPV TTPPLQNKAT VLYIGRIPHG FYETEIEAFF SQFGTVKRVR VARNKKTGKS
101: KHFGFIQFED PEVAEIAAGA MNDYLLMEHM LKVHVIEPEN VKPNLWRGFK CNFKPVDSVQ IERRQLNKER TLEEHRKMLQ KIVKKDQKRR KRIEAAGIEY
201: ECPELVGNTQ PVPKRIKFSE ED
101: KHFGFIQFED PEVAEIAAGA MNDYLLMEHM LKVHVIEPEN VKPNLWRGFK CNFKPVDSVQ IERRQLNKER TLEEHRKMLQ KIVKKDQKRR KRIEAAGIEY
201: ECPELVGNTQ PVPKRIKFSE ED
Arabidopsis Description
AT5g04600/T32M21_200 [Source:UniProtKB/TrEMBL;Acc:Q9LZ65]
SUBAcon: [plastid,cytosol]
SUBAcon: [plastid,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.