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Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • plastid 1
  • nucleus 3
  • mitochondrion 3
PPI

Inferred distinct locusB in Crop

locusBlocations
OQU86087

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT5G04600.1 OQU86087 AT5G58720.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KXG34111 Sorghum cytosol 81.76 60.47
Zm00001d050300_P002 Maize mitochondrion, nucleus 77.36 57.21
TraesCS6A01G011400.1 Wheat nucleus 73.58 54.67
TraesCS6D01G014200.1 Wheat nucleus 72.96 54.21
TraesCS6B01G017700.1 Wheat nucleus 72.96 54.21
Os08t0412200-01 Rice nucleus 71.07 52.8
HORVU2Hr1G033820.10 Barley cytosol, mitochondrion, nucleus, plastid 71.07 52.8
TraesCS2B01G205700.1 Wheat cytosol, mitochondrion, nucleus, plastid 69.81 52.11
TraesCS2A01G178900.1 Wheat cytosol, mitochondrion, nucleus, plastid 69.81 51.87
TraesCS2D01G187400.1 Wheat mitochondrion, nucleus 70.44 50.22
HORVU6Hr1G002240.2 Barley nucleus 73.58 48.55
Solyc11g066630.1.1 Tomato nucleus 44.03 48.28
KRH38103 Soybean nucleus 55.35 41.12
KRH71854 Soybean nucleus 53.46 40.28
PGSC0003DMT400018358 Potato nucleus 54.72 40.09
Solyc06g074720.2.1 Tomato nucleus 54.09 39.27
VIT_14s0030g01680.t01 Wine grape cytosol, mitochondrion, nucleus 55.97 39.21
PGSC0003DMT400001225 Potato nucleus 52.83 38.89
GSMUA_Achr3P18350_001 Banana nucleus 52.83 38.36
CDY04918 Canola cytosol, plastid 49.06 35.62
AT5G04600.1 Thale cress cytosol, plastid 49.69 35.59
Bra028783.1-P Field mustard cytosol, plastid 48.43 35.16
CDY44869 Canola cytosol, plastid 49.06 34.98
Bra009440.1-P Field mustard cytosol, plastid 48.43 34.53
CDY14147 Canola plastid 48.43 34.53
CDX70212 Canola cytosol, plastid 48.43 34.53
GSMUA_AchrUn_... Banana nucleus 53.46 28.52
KRH40007 Soybean cytosol 15.09 26.97
Protein Annotations
EnsemblPlants:OQU80418EnsemblPlantsGene:SORBI_3007G124900Gene3D:3.30.70.330GO:GO:0003674GO:GO:0003676GO:GO:0005488
InterPro:IPR012677InterPro:Nucleotide-bd_a/b_plait_sfInterPro:RBD_domain_sfPANTHER:PTHR44517ProteinID:OQU80418ProteinID:OQU80418.1
SUPFAM:SSF54928UniParc:UPI000B8BA170UniProt:A0A1Z5R9J1MapMan:17.1.2.2.1.7::
Description
hypothetical protein
Coordinates
chr7:-:53466699..53469607
Molecular Weight (calculated)
18425.5 Da
IEP (calculated)
9.893
GRAVY (calculated)
-0.562
Length
159 amino acids
Sequence
(BLAST)
001: MGMRDKKWNQ KLVLARRRGQ HPEEPENTAK VVYIGHIPHG FYEDEKQGKS KHYGFIEFES PVVSKIVADE MNNYLLFEHT LQVSLVLPEK VHPKLWKGVR
101: HGFIPIDRVA IEQMRHNKMV EGIVKQDEKR RKRIKAAGID YECPALRYEL LAAAVPGTV
Best Arabidopsis Sequence Match ( AT5G04600.1 )
(BLAST)
001: MGAKAKKALK KNMKKVAASA SSSQLPLPQN PKPSADFLPL EGGPARKAPV TTPPLQNKAT VLYIGRIPHG FYETEIEAFF SQFGTVKRVR VARNKKTGKS
101: KHFGFIQFED PEVAEIAAGA MNDYLLMEHM LKVHVIEPEN VKPNLWRGFK CNFKPVDSVQ IERRQLNKER TLEEHRKMLQ KIVKKDQKRR KRIEAAGIEY
201: ECPELVGNTQ PVPKRIKFSE ED
Arabidopsis Description
AT5g04600/T32M21_200 [Source:UniProtKB/TrEMBL;Acc:Q9LZ65]
SUBAcon: [plastid,cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.