Factsheet for Bra028783.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 4
mitochondrion 2
nucleus 2
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra006747.1-P
Bra020357.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G04600.1	Bra006747.1-P	AT5G58720.1	21798944
AT5G04600.1	Bra020357.1-P	AT5G58720.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY04918	Canola	cytosol, plastid	98.63	98.63
Bra009440.1-P	Field mustard	cytosol, plastid	94.06	92.38
AT5G04600.1	Thale cress	cytosol, plastid	85.39	84.23
Solyc11g066630.1.1	Tomato	nucleus	44.29	66.9
KRH38103	Soybean	nucleus	64.38	65.89
KRH71854	Soybean	nucleus	62.56	64.93
PGSC0003DMT400001225	Potato	nucleus	60.73	61.57
VIT_14s0030g01680.t01	Wine grape	cytosol, mitochondrion, nucleus	62.1	59.91
PGSC0003DMT400018358	Potato	nucleus	58.45	58.99
Solyc06g074720.2.1	Tomato	nucleus	56.62	56.62
GSMUA_Achr3P18350_001	Banana	nucleus	56.62	56.62
TraesCS6D01G014200.1	Wheat	nucleus	55.25	56.54
TraesCS6B01G017700.1	Wheat	nucleus	54.79	56.07
TraesCS6A01G011400.1	Wheat	nucleus	54.79	56.07
KXG34111	Sorghum	cytosol	54.79	55.81
TraesCS2A01G178900.1	Wheat	cytosol, mitochondrion, nucleus, plastid	52.97	54.21
TraesCS2B01G205700.1	Wheat	cytosol, mitochondrion, nucleus, plastid	52.51	53.99
Os08t0412200-01	Rice	nucleus	52.51	53.74
Zm00001d050300_P002	Maize	mitochondrion, nucleus	50.68	51.63
TraesCS2D01G187400.1	Wheat	mitochondrion, nucleus	52.51	51.57
HORVU2Hr1G033820.10	Barley	cytosol, mitochondrion, nucleus, plastid	49.32	50.47
HORVU6Hr1G002240.2	Barley	nucleus	53.42	48.55
OQU80418	Sorghum	nucleus	35.16	48.43
KRH40007	Soybean	cytosol	17.81	43.82
GSMUA_AchrUn_...	Banana	nucleus	55.71	40.94

Protein Annotations

EnsemblPlants:Bra028783.1	EnsemblPlants:Bra028783.1-P	EnsemblPlantsGene:Bra028783	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nop15_RRM	InterPro:Nucleotide-bd_a/b_plait_sf
InterPro:RBD_domain_sf	InterPro:RRM_dom	PANTHER:PTHR44517	PFAM:PF00076	PFscan:PS50102	SEG:seg
SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI00025430A9	UniProt:M4EJ18	MapMan:17.1.2.2.1.7	:

Description

AT5G04600 (E=5e-092) | RNA recognition motif (RRM)-containing protein

Coordinates

chrA02:+:2080848..2082466

Molecular Weight (calculated)

24995.6 Da

IEP (calculated)

10.728

GRAVY (calculated)

-0.691

Length

219 amino acids

Sequence
(BLAST)

001: MGAKAKKALK KNMKKISASS SSQLAVPQNP KPSADFLPLG GGPARKAPVT KPLESKATVL YIGRLPHGFY ETEIEAFFTQ FGTVKRVRVA RNKKTGKSKH
101: FGFIQFEDPE VAEIAAGAMN DYLLLEHMLQ VRVIPPEHVK PNLWKGFKCQ YKPVDWVQIE RKQHNKERTL EEHRKMLHKV VKRDQKRRKR IEAAGIQYQC
201: PELVGNTQPL PKKIKFSED

Best Arabidopsis Sequence Match ( AT5G04600.1 )
(BLAST)

001: MGAKAKKALK KNMKKVAASA SSSQLPLPQN PKPSADFLPL EGGPARKAPV TTPPLQNKAT VLYIGRIPHG FYETEIEAFF SQFGTVKRVR VARNKKTGKS
101: KHFGFIQFED PEVAEIAAGA MNDYLLMEHM LKVHVIEPEN VKPNLWRGFK CNFKPVDSVQ IERRQLNKER TLEEHRKMLQ KIVKKDQKRR KRIEAAGIEY
201: ECPELVGNTQ PVPKRIKFSE ED

Arabidopsis Description

AT5g04600/T32M21_200 [Source:UniProtKB/TrEMBL;Acc:Q9LZ65]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.