Factsheet for GSMUA_Achr3P18350_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 3
mitochondrion 3
nucleus 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr7P14310_001
GSMUA_Achr7P14320_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G04600.1	GSMUA_Achr7P14310_001	AT5G58720.1	21798944
AT5G04600.1	GSMUA_Achr7P14320_001	AT5G58720.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g066630.1.1	Tomato	nucleus	46.58	70.34
GSMUA_AchrUn_...	Banana	nucleus	89.95	66.11
KXG34111	Sorghum	cytosol	63.01	64.19
PGSC0003DMT400001225	Potato	nucleus	61.64	62.5
PGSC0003DMT400018358	Potato	nucleus	61.64	62.21
KRH38103	Soybean	nucleus	60.27	61.68
TraesCS2A01G178900.1	Wheat	cytosol, mitochondrion, nucleus, plastid	60.27	61.68
KRH71854	Soybean	nucleus	59.36	61.61
TraesCS2B01G205700.1	Wheat	cytosol, mitochondrion, nucleus, plastid	59.82	61.5
TraesCS6A01G011400.1	Wheat	nucleus	59.82	61.22
TraesCS6D01G014200.1	Wheat	nucleus	59.82	61.22
VIT_14s0030g01680.t01	Wine grape	cytosol, mitochondrion, nucleus	63.01	60.79
TraesCS6B01G017700.1	Wheat	nucleus	59.36	60.75
Os08t0412200-01	Rice	nucleus	58.9	60.28
Solyc06g074720.2.1	Tomato	nucleus	59.36	59.36
TraesCS2D01G187400.1	Wheat	mitochondrion, nucleus	59.82	58.74
Zm00001d050300_P002	Maize	mitochondrion, nucleus	57.08	58.14
HORVU2Hr1G033820.10	Barley	cytosol, mitochondrion, nucleus, plastid	56.16	57.48
AT5G04600.1	Thale cress	cytosol, plastid	57.99	57.21
Bra009440.1-P	Field mustard	cytosol, plastid	57.99	56.95
CDY44869	Canola	cytosol, plastid	57.99	56.95
CDX70212	Canola	cytosol, plastid	57.99	56.95
Bra028783.1-P	Field mustard	cytosol, plastid	56.62	56.62
CDY04918	Canola	cytosol, plastid	56.16	56.16
CDY14147	Canola	plastid	56.62	55.61
HORVU6Hr1G002240.2	Barley	nucleus	58.9	53.53
OQU80418	Sorghum	nucleus	38.36	52.83
KRH40007	Soybean	cytosol	17.35	42.7

Protein Annotations

EnsemblPlants:GSMUA_Achr3P18350_001	EnsemblPlants:GSMUA_Achr3T18350_001	EnsemblPlantsGene:GSMUA_Achr3G18350_001	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:RBD_domain_sf
InterPro:RRM_dom	PANTHER:PTHR44517	PFAM:PF00076	PFscan:PS50102	SEG:seg	SMART:SM00360
SUPFAM:SSF54928	UniParc:UPI000294CD44	UniProt:M0SFQ1	MapMan:17.1.2.2.1.7	:	:

Description

RNA recognition motif containing protein, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr3G18350_001]

Coordinates

chr3:+:19826433..19831129

Molecular Weight (calculated)

25629.0 Da

IEP (calculated)

10.396

GRAVY (calculated)

-0.878

Length

219 amino acids

Sequence
(BLAST)

001: MGAKAKKALK KKLKKSSFSQ LSISRHTNES SDFLPLEGGP GRKITQEEDE PVKNTATVLY IGHIPHGFYE EQMEGFFKQF GKIKHLRIAR NRKTGKSKHY
101: GFIEFENPEV AKVVADEIHN YLLFEHNLQI HLIPPERVHP KLWRGVNWRY NPLNWTKIAR KQHNKERTVE EHQRMIKGIL KRDEKRRNRI KAAGVEYECP
201: DLVGLIQPAA KKIKFDEED

Best Arabidopsis Sequence Match ( AT5G04600.1 )
(BLAST)

001: MGAKAKKALK KNMKKVAASA SSSQLPLPQN PKPSADFLPL EGGPARKAPV TTPPLQNKAT VLYIGRIPHG FYETEIEAFF SQFGTVKRVR VARNKKTGKS
101: KHFGFIQFED PEVAEIAAGA MNDYLLMEHM LKVHVIEPEN VKPNLWRGFK CNFKPVDSVQ IERRQLNKER TLEEHRKMLQ KIVKKDQKRR KRIEAAGIEY
201: ECPELVGNTQ PVPKRIKFSE ED

Arabidopsis Description

AT5g04600/T32M21_200 [Source:UniProtKB/TrEMBL;Acc:Q9LZ65]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.