Skip to main content
crop-pal logo
Wheat
Search for another protein from :
Wheat
Subcellular Localization
min:
: max

 
Winner_takes_all: mitochondrion, plastid, nucleus, cytosol

Predictor Summary:
  • nucleus 1
  • mitochondrion 2
  • plastid 1
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, mitochondrion, nucleus, plastid
Any Predictor:cytosol, mitochondrion, nucleus, plastid
MultiLoc:nucleus
PProwler:mitochondrion
TargetP:mitochondrion
WoLF PSORT:plastid
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
TraesCS3A01G150300.2
TraesCS3B01G177300.1
TraesCS3D01G158200.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT5G04600.1 TraesCS3A01G150300.2 AT5G58720.1 21798944
AT5G04600.1 TraesCS3B01G177300.1 AT5G58720.1 21798944
AT5G04600.1 TraesCS3D01G158200.1 AT5G58720.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS6A01G011400.1 Wheat nucleus 93.46 93.46
TraesCS2B01G205700.1 Wheat cytosol, mitochondrion, nucleus, plastid 92.06 92.49
TraesCS2D01G187400.1 Wheat mitochondrion, nucleus 94.86 91.03
HORVU2Hr1G033820.10 Barley cytosol, mitochondrion, nucleus, plastid 87.38 87.38
KXG34111 Sorghum cytosol 80.84 80.47
Os08t0412200-01 Rice nucleus 80.37 80.37
Zm00001d050300_P002 Maize mitochondrion, nucleus 72.43 72.09
OQU80418 Sorghum nucleus 51.87 69.81
Solyc11g066630.1.1 Tomato nucleus 42.52 62.76
GSMUA_Achr3P18350_001 Banana nucleus 61.68 60.27
KRH71854 Soybean nucleus 56.54 57.35
KRH38103 Soybean nucleus 57.01 57.01
VIT_14s0030g01680.t01 Wine grape cytosol, mitochondrion, nucleus 57.94 54.63
PGSC0003DMT400018358 Potato nucleus 55.14 54.38
CDY04918 Canola cytosol, plastid 54.21 52.97
Bra028783.1-P Field mustard cytosol, plastid 54.21 52.97
PGSC0003DMT400001225 Potato nucleus 53.27 52.78
CDY44869 Canola cytosol, plastid 54.67 52.47
CDY14147 Canola plastid 54.67 52.47
CDX70212 Canola cytosol, plastid 54.67 52.47
Bra009440.1-P Field mustard cytosol, plastid 54.67 52.47
Solyc06g074720.2.1 Tomato nucleus 52.8 51.6
AT5G04600.1 Thale cress cytosol, plastid 52.8 50.9
GSMUA_AchrUn_... Banana nucleus 61.68 44.3
KRH40007 Soybean cytosol 15.89 38.2
Protein Annotations
EnsemblPlants:TraesCS2A01G178900.1EnsemblPlantsGene:TraesCS2A01G178900Gene3D:3.30.70.330GO:GO:0003674GO:GO:0003676GO:GO:0005488
InterPro:IPR000504InterPro:IPR012677InterPro:Nucleotide-bd_a/b_plait_sfInterPro:RBD_domain_sfInterPro:RRM_domPANTHER:PTHR44517
PFAM:PF00076PFscan:PS50102SMART:SM00360SUPFAM:SSF54928TIGR:cd12307MapMan:17.1.2.2.1.7
Description
No Description!
Coordinates
chr2A:+:137931829..137934156
Molecular Weight (calculated)
24767.0 Da
IEP (calculated)
10.449
GRAVY (calculated)
-0.817
Length
214 amino acids
Sequence
(BLAST)
001: MGLRDKKRNQ RRVLSRRSAG PRAGEGKDFL PLEGKEQRIR EKKQAEEPEN TATVLYIGHI PHGFYEDQMQ GFFQQFGAVK RVRIARNRKT GKSKHYGFIE
101: FENPEVAKIV ADEMNNYLLF EHTLQIAPVP LEKVHAKLWK GVRKGFVPVD QVAIERKRLS KDRTVEEHQR MLEGIVKRDE KCRKRIKAAG IDYECPALIG
201: SVQPSAKKIK FDED
Best Arabidopsis Sequence Match ( AT5G04600.1 )
(BLAST)
001: MGAKAKKALK KNMKKVAASA SSSQLPLPQN PKPSADFLPL EGGPARKAPV TTPPLQNKAT VLYIGRIPHG FYETEIEAFF SQFGTVKRVR VARNKKTGKS
101: KHFGFIQFED PEVAEIAAGA MNDYLLMEHM LKVHVIEPEN VKPNLWRGFK CNFKPVDSVQ IERRQLNKER TLEEHRKMLQ KIVKKDQKRR KRIEAAGIEY
201: ECPELVGNTQ PVPKRIKFSE ED
Arabidopsis Description
AT5g04600/T32M21_200 [Source:UniProtKB/TrEMBL;Acc:Q9LZ65]
SUBAcon: [plastid,cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.