Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- nucleus 2
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
27291164
endoplasmic reticulum: 28499913 nucleus: 28499913 |
msms PMID:
28499913
doi
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G04600.1 | KRG98291 | AT5G58720.1 | 21798944 |
| AT5G04600.1 | KRH30312 | AT5G58720.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH71854 | Soybean | nucleus | 92.06 | 93.36 |
| Solyc11g066630.1.1 | Tomato | nucleus | 54.21 | 80.0 |
| PGSC0003DMT400018358 | Potato | nucleus | 69.16 | 68.2 |
| PGSC0003DMT400001225 | Potato | nucleus | 68.69 | 68.06 |
| Solyc06g074720.2.1 | Tomato | nucleus | 67.76 | 66.21 |
| VIT_14s0030g01680.t01 | Wine grape | cytosol, mitochondrion, nucleus | 69.63 | 65.64 |
| Bra028783.1-P | Field mustard | cytosol, plastid | 65.89 | 64.38 |
| CDY04918 | Canola | cytosol, plastid | 65.89 | 64.38 |
| CDY44869 | Canola | cytosol, plastid | 66.36 | 63.68 |
| CDY14147 | Canola | plastid | 65.89 | 63.23 |
| AT5G04600.1 | Thale cress | cytosol, plastid | 65.42 | 63.06 |
| Bra009440.1-P | Field mustard | cytosol, plastid | 64.95 | 62.33 |
| CDX70212 | Canola | cytosol, plastid | 64.95 | 62.33 |
| KXG34111 | Sorghum | cytosol | 62.62 | 62.33 |
| Os08t0412200-01 | Rice | nucleus | 60.75 | 60.75 |
| GSMUA_Achr3P18350_001 | Banana | nucleus | 61.68 | 60.27 |
| TraesCS6A01G011400.1 | Wheat | nucleus | 57.94 | 57.94 |
| TraesCS6D01G014200.1 | Wheat | nucleus | 57.94 | 57.94 |
| TraesCS6B01G017700.1 | Wheat | nucleus | 57.48 | 57.48 |
| Zm00001d050300_P002 | Maize | mitochondrion, nucleus | 57.48 | 57.21 |
| TraesCS2A01G178900.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 57.01 | 57.01 |
| TraesCS2B01G205700.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 56.07 | 56.34 |
| KRH40007 | Soybean | cytosol | 23.36 | 56.18 |
| OQU80418 | Sorghum | nucleus | 41.12 | 55.35 |
| HORVU2Hr1G033820.10 | Barley | cytosol, mitochondrion, nucleus, plastid | 54.21 | 54.21 |
| TraesCS2D01G187400.1 | Wheat | mitochondrion, nucleus | 56.07 | 53.81 |
| HORVU6Hr1G002240.2 | Barley | nucleus | 57.01 | 50.62 |
| GSMUA_AchrUn_... | Banana | nucleus | 62.15 | 44.63 |
Protein Annotations
| EntrezGene:100778780 | MapMan:17.1.2.2.1.7 | Gene3D:3.30.70.330 | EMBL:ACUP02005614 | ncoils:Coil | EnsemblPlantsGene:GLYMA_09G111400 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | UniProt:I1L2M0 | InterPro:IPR000504 |
| InterPro:IPR012677 | EnsemblPlants:KRH38103 | ProteinID:KRH38103 | ProteinID:KRH38103.1 | ProteinID:KRH38104.1 | InterPro:Nucleotide-bd_a/b_plait_sf |
| PFAM:PF00076 | PFscan:PS50102 | PANTHER:PTHR44517 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 |
| SUPFAM:SSF54928 | UniParc:UPI00023382FA | SEG:seg | : | : | : |
Description
hypothetical protein
Coordinates
chr9:+:22063470..22066829
Molecular Weight (calculated)
24907.2 Da
IEP (calculated)
10.378
GRAVY (calculated)
-0.885
Length
214 amino acids
Sequence
(BLAST)
(BLAST)
001: MGKKAKKAMK KNLKRASFNK NPSEDADFLP LEGGPARKLA GQQKPPPPPE NTATVLYVGR IPHGFYEKEM EGYFGQFGTI KRLRIARNKK SGKSRHFGFI
101: EFESPEVAKI VADTMHNYLL FEHLLQVYVI PPEHVHPRIW RGFNYHYKPL DSVQIERKRH DKDRTLEEHK KLVEKVLKHD QKRRKRIEAA GIDYECPEIV
201: GNIQPAPKKI KFED
101: EFESPEVAKI VADTMHNYLL FEHLLQVYVI PPEHVHPRIW RGFNYHYKPL DSVQIERKRH DKDRTLEEHK KLVEKVLKHD QKRRKRIEAA GIDYECPEIV
201: GNIQPAPKKI KFED
001: MGAKAKKALK KNMKKVAASA SSSQLPLPQN PKPSADFLPL EGGPARKAPV TTPPLQNKAT VLYIGRIPHG FYETEIEAFF SQFGTVKRVR VARNKKTGKS
101: KHFGFIQFED PEVAEIAAGA MNDYLLMEHM LKVHVIEPEN VKPNLWRGFK CNFKPVDSVQ IERRQLNKER TLEEHRKMLQ KIVKKDQKRR KRIEAAGIEY
201: ECPELVGNTQ PVPKRIKFSE ED
101: KHFGFIQFED PEVAEIAAGA MNDYLLMEHM LKVHVIEPEN VKPNLWRGFK CNFKPVDSVQ IERRQLNKER TLEEHRKMLQ KIVKKDQKRR KRIEAAGIEY
201: ECPELVGNTQ PVPKRIKFSE ED
Arabidopsis Description
AT5g04600/T32M21_200 [Source:UniProtKB/TrEMBL;Acc:Q9LZ65]
SUBAcon: [plastid,cytosol]
SUBAcon: [plastid,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.