Factsheet for Os08t0412200-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
nucleus 3
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

nucleus: 23777608

msms PMID: 23777608 doi

H Mujahid, F Tan, J Zhang, BR Nallamilli, K Pendarvis, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, MS 39762, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0225100-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G04600.1	Os01t0225100-01	AT5G58720.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6B01G017700.1	Wheat	nucleus	83.18	83.18
TraesCS6A01G011400.1	Wheat	nucleus	83.18	83.18
TraesCS6D01G014200.1	Wheat	nucleus	82.71	82.71
KXG34111	Sorghum	cytosol	82.71	82.33
TraesCS2B01G205700.1	Wheat	cytosol, mitochondrion, nucleus, plastid	81.78	82.16
TraesCS2A01G178900.1	Wheat	cytosol, mitochondrion, nucleus, plastid	80.37	80.37
TraesCS2D01G187400.1	Wheat	mitochondrion, nucleus	82.24	78.92
HORVU2Hr1G033820.10	Barley	cytosol, mitochondrion, nucleus, plastid	76.64	76.64
Zm00001d050300_P002	Maize	mitochondrion, nucleus	75.7	75.35
HORVU6Hr1G002240.2	Barley	nucleus	82.24	73.03
OQU80418	Sorghum	nucleus	52.8	71.07
Solyc11g066630.1.1	Tomato	nucleus	45.79	67.59
KRH71854	Soybean	nucleus	60.28	61.14
KRH38103	Soybean	nucleus	60.75	60.75
GSMUA_Achr3P18350_001	Banana	nucleus	60.28	58.9
PGSC0003DMT400001225	Potato	nucleus	57.94	57.41
VIT_14s0030g01680.t01	Wine grape	cytosol, mitochondrion, nucleus	60.28	56.83
PGSC0003DMT400018358	Potato	nucleus	57.01	56.22
Solyc06g074720.2.1	Tomato	nucleus	56.07	54.79
CDY04918	Canola	cytosol, plastid	53.74	52.51
Bra028783.1-P	Field mustard	cytosol, plastid	53.74	52.51
CDY44869	Canola	cytosol, plastid	54.21	52.02
AT5G04600.1	Thale cress	cytosol, plastid	53.74	51.8
CDY14147	Canola	plastid	53.74	51.57
CDX70212	Canola	cytosol, plastid	53.74	51.57
Bra009440.1-P	Field mustard	cytosol, plastid	53.74	51.57
GSMUA_AchrUn_...	Banana	nucleus	60.75	43.62
KRH40007	Soybean	cytosol	16.82	40.45

Protein Annotations

MapMan:17.1.2.2.1.7	Gene3D:3.30.70.330	EntrezGene:4345558	EMBL:AK059631	EMBL:AK099367	EMBL:AK104578
ProteinID:BAC99692.1	ProteinID:BAF23707.1	ProteinID:BAT05410.1	ProteinID:EAZ42718.1	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005730	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	EnsemblPlantsGene:Os08g0412200	EnsemblPlants:Os08t0412200-01
PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR44517	UniProt:Q6Z568	InterPro:RBD_domain_sf	InterPro:RRM_dom
SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI00001D8DBD	RefSeq:XP_015650216.1	SEG:seg	:

Description

Nucleotide-binding, alpha-beta plait domain containing protein. (Os08t0412200-01)

Coordinates

chr8:-:19721383..19725995

Molecular Weight (calculated)

25105.5 Da

IEP (calculated)

10.734

GRAVY (calculated)

-0.936

Length

214 amino acids

Sequence
(BLAST)

001: MGLREKKRNQ RRVLARRSAA PRSGEGKDFL PLEERPGKKR AREEQPEEPE NTSTVLYIGH IPHGFYEEQM QGFFQQFGTV KRLRIARNRK TGKSKHYGFI
101: EFENPEVAKI VADEMNNYLL FEHTLQIAIV PPEKIHPKLW KGVRRGFIPI DRVAIERRRL NKDKTIEEHK KLVDKIVKRD EKRRKRIKAA GIDYECPPLI
201: GSVQPSAKKI KFED

Best Arabidopsis Sequence Match ( AT5G04600.1 )
(BLAST)

001: MGAKAKKALK KNMKKVAASA SSSQLPLPQN PKPSADFLPL EGGPARKAPV TTPPLQNKAT VLYIGRIPHG FYETEIEAFF SQFGTVKRVR VARNKKTGKS
101: KHFGFIQFED PEVAEIAAGA MNDYLLMEHM LKVHVIEPEN VKPNLWRGFK CNFKPVDSVQ IERRQLNKER TLEEHRKMLQ KIVKKDQKRR KRIEAAGIEY
201: ECPELVGNTQ PVPKRIKFSE ED

Arabidopsis Description

AT5g04600/T32M21_200 [Source:UniProtKB/TrEMBL;Acc:Q9LZ65]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.