CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 3
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX71154
CDY02832
CDY32688
CDY61025

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G04600.1	CDX71154	AT5G58720.1	21798944
AT5G04600.1	CDY02832	AT5G58720.1	21798944
AT5G04600.1	CDY32688	AT5G58720.1	21798944
AT5G04600.1	CDY61025	AT5G58720.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY04918	Canola	cytosol, plastid	95.52	97.26
CDX70212	Canola	cytosol, plastid	95.52	95.52
CDY44869	Canola	cytosol, plastid	95.07	95.07
AT5G04600.1	Thale cress	cytosol, plastid	81.61	81.98
Solyc11g066630.1.1	Tomato	nucleus	43.95	67.59
KRH38103	Soybean	nucleus	63.23	65.89
KRH71854	Soybean	nucleus	61.88	65.4
PGSC0003DMT400001225	Potato	nucleus	60.09	62.04
VIT_14s0030g01680.t01	Wine grape	cytosol, mitochondrion, nucleus	60.99	59.91
PGSC0003DMT400018358	Potato	nucleus	57.85	59.45
Solyc06g074720.2.1	Tomato	nucleus	56.05	57.08
GSMUA_Achr3P18350_001	Banana	nucleus	55.61	56.62
TraesCS6D01G014200.1	Wheat	nucleus	54.26	56.54
TraesCS6A01G011400.1	Wheat	nucleus	53.81	56.07
TraesCS6B01G017700.1	Wheat	nucleus	53.81	56.07
KXG34111	Sorghum	cytosol	53.81	55.81
TraesCS2B01G205700.1	Wheat	cytosol, mitochondrion, nucleus, plastid	52.47	54.93
TraesCS2A01G178900.1	Wheat	cytosol, mitochondrion, nucleus, plastid	52.47	54.67
Os08t0412200-01	Rice	nucleus	51.57	53.74
Zm00001d050300_P002	Maize	mitochondrion, nucleus	49.78	51.63
TraesCS2D01G187400.1	Wheat	mitochondrion, nucleus	51.57	51.57
HORVU2Hr1G033820.10	Barley	cytosol, mitochondrion, nucleus, plastid	48.88	50.93
HORVU6Hr1G002240.2	Barley	nucleus	52.91	48.96
OQU80418	Sorghum	nucleus	34.53	48.43
KRH40007	Soybean	cytosol	16.59	41.57
GSMUA_AchrUn_...	Banana	nucleus	54.71	40.94

Protein Annotations

MapMan:17.1.2.2.1.7	Gene3D:3.30.70.330	GO:A0A078FMI3	UniProt:A0A078FMI3	EnsemblPlants:CDY14147	ProteinID:CDY14147
ProteinID:CDY14147.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488
EnsemblPlantsGene:GSBRNA2T00078693001	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nop15_RRM	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076
PFscan:PS50102	PANTHER:PTHR44517	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928
UniParc:UPI0004EEAF80	SEG:seg	:	:	:	:

Description

BnaC02g02640DBnaC02g02640D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FMI3]

Coordinates

chrLK032040:-:622688..624544

Molecular Weight (calculated)

25261.9 Da

IEP (calculated)

10.676

GRAVY (calculated)

-0.630

Length

223 amino acids

Sequence
(BLAST)

001: MGAKAKKALK KNMKKISASA AASSSSQLAV PQNPKPSADF LPLGGGPARK APVIKTVESK ATVLYIGRLP HGFYETEIEA FFTQFGTVKR VRVARNKKTG
101: KSKHFGFIQF EDPEVAEIAA GAMNDYLLLE HMLQVRVIPP EHVKPNLWKG FKCQYKPVDW VQIERKQHNK ERTLEEHRKM LNKVVKRDQK RRKRIEAAGI
201: DYQCPELVGN TQPLPKKIKF SED

Best Arabidopsis Sequence Match ( AT5G04600.1 )
(BLAST)

001: MGAKAKKALK KNMKKVAASA SSSQLPLPQN PKPSADFLPL EGGPARKAPV TTPPLQNKAT VLYIGRIPHG FYETEIEAFF SQFGTVKRVR VARNKKTGKS
101: KHFGFIQFED PEVAEIAAGA MNDYLLMEHM LKVHVIEPEN VKPNLWRGFK CNFKPVDSVQ IERRQLNKER TLEEHRKMLQ KIVKKDQKRR KRIEAAGIEY
201: ECPELVGNTQ PVPKRIKFSE ED

Arabidopsis Description

AT5g04600/T32M21_200 [Source:UniProtKB/TrEMBL;Acc:Q9LZ65]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.