Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY32688 | Canola | nucleus | 84.29 | 86.44 |
| CDX71154 | Canola | nucleus | 63.22 | 75.0 |
| AT5G58720.1 | Thale cress | nucleus | 71.65 | 72.06 |
| CDY61025 | Canola | nucleus | 66.86 | 70.22 |
| GSMUA_Achr7P14310_001 | Banana | endoplasmic reticulum, golgi | 9.96 | 55.91 |
| VIT_06s0004g06590.t01 | Wine grape | nucleus | 43.49 | 46.42 |
| Zm00001d017254_P002 | Maize | cytosol | 13.22 | 44.52 |
| KRG98291 | Soybean | nucleus | 43.3 | 44.4 |
| KRH30312 | Soybean | nucleus | 42.53 | 43.36 |
| PGSC0003DMT400010646 | Potato | nucleus | 41.38 | 42.52 |
| Solyc06g007110.2.1 | Tomato | nucleus | 40.61 | 41.65 |
| GSMUA_Achr7P14320_001 | Banana | nucleus | 27.59 | 33.33 |
| TraesCS3B01G177300.1 | Wheat | plastid | 33.91 | 32.84 |
| TraesCS3A01G150300.2 | Wheat | plastid | 35.25 | 31.19 |
| TraesCS3D01G158200.1 | Wheat | plastid | 34.87 | 30.85 |
| OQU86087 | Sorghum | nucleus | 34.29 | 30.13 |
| HORVU3Hr1G030600.8 | Barley | mitochondrion | 35.44 | 26.89 |
| Zm00001d039321_P008 | Maize | nucleus | 32.76 | 26.15 |
| Os01t0225100-01 | Rice | nucleus | 11.49 | 21.28 |
| CDY21839 | Canola | nucleus | 19.16 | 21.05 |
| CDX97665 | Canola | nucleus | 19.35 | 20.91 |
| CDY20114 | Canola | nucleus | 18.97 | 20.8 |
| CDX98557 | Canola | nucleus | 18.97 | 20.04 |
Protein Annotations
| Gene3D:3.30.1370.110 | MapMan:35.1 | EnsemblPlants:CDY02832 | ProteinID:CDY02832 | ProteinID:CDY02832.1 | InterPro:DUF1771 |
| EnsemblPlantsGene:GSBRNA2T00115023001 | InterPro:IPR002625 | PFAM:PF01713 | PFAM:PF08590 | PFscan:PS50828 | PANTHER:PTHR13308 |
| PANTHER:PTHR13308:SF22 | SMART:SM00463 | SMART:SM01162 | SUPFAM:SSF160443 | InterPro:Smr_dom | InterPro:Smr_dom_sf |
| UniParc:UPI0004EE5709 | SEG:seg | : | : | : | : |
Description
BnaC02g10570D
Coordinates
chrLK031937:-:702721..706074
Molecular Weight (calculated)
56444.5 Da
IEP (calculated)
5.610
GRAVY (calculated)
-0.660
Length
522 amino acids
Sequence
(BLAST)
(BLAST)
001: MKHKSQQQKR KKKRSSGGGA AASDGNKKDV EEEERKDVGG ESEKVEKQNI DSLMEAFCSV SVEEATAAYR EAGGDLNRAA DVLSNLVDDD PSTISVASGS
101: SGQETGSTSE YGAGSSSSCG EDLTRERWFK GGKQNRVIAA TGMVSSVIAK DYLKKKEFPL AERSYEVCGN GKKAGDREKA EQFLSSMLGD DCELSMAVVR
201: DVLCQCGYDV DMALNVLLDM SSSSTDDSLS GRCSGIGFSD SPAESSFDID TSESEPSFWG GYSQRDYSKA LMSSADPFAT SQGSSADPFA TSYGSSDSEP
301: CLPQKVLESL FNIPRSPKHE PKAMNWRNVA KKMQSLGSID GSSSSGEGSQ PNTLVKDDGY HELRKGANDQ WNVTKSYYQK AAEAYSKGGR AHAAYLSEKG
401: RAASKLAQRA DERASKDIFV ARNKGIENVI TIDLHGQHVK QAMKLLKMHL LLGSYVPSIQ TLRVITGCGS HGFGKSKVKQ SVTNLLEREG VRYCEENKGT
501: LLIKLEGCSR EFSFLDTESD SE
101: SGQETGSTSE YGAGSSSSCG EDLTRERWFK GGKQNRVIAA TGMVSSVIAK DYLKKKEFPL AERSYEVCGN GKKAGDREKA EQFLSSMLGD DCELSMAVVR
201: DVLCQCGYDV DMALNVLLDM SSSSTDDSLS GRCSGIGFSD SPAESSFDID TSESEPSFWG GYSQRDYSKA LMSSADPFAT SQGSSADPFA TSYGSSDSEP
301: CLPQKVLESL FNIPRSPKHE PKAMNWRNVA KKMQSLGSID GSSSSGEGSQ PNTLVKDDGY HELRKGANDQ WNVTKSYYQK AAEAYSKGGR AHAAYLSEKG
401: RAASKLAQRA DERASKDIFV ARNKGIENVI TIDLHGQHVK QAMKLLKMHL LLGSYVPSIQ TLRVITGCGS HGFGKSKVKQ SVTNLLEREG VRYCEENKGT
501: LLIKLEGCSR EFSFLDTESD SE
001: MKQKNQHKKK KKRSCAAKPS GDGTTSDGNK KDVEEERKDG EGKREIENVG KNFIESLMEA FCSVSMEEAM AAYKEAGGDL NKAAEILSDL VESGDDPSTS
101: SVASGSSGQE TASTSEYGAG SSSSCSEDLT RDRWFKGSKQ SRVIAATGMV SSVIAKDYLK PNPVRKEFPM MERSKELCGN GKKAADREKA EQFLSSMLGD
201: DCELSMAVVR DVLCQCGYDV DMALNVLLDM SSSSTDDSLS GKCFGIGVSD SLAESSFDTD TSDCELFWGG DYSQRDYAKA LMSSQDPFAT TQGIDELGLP
301: QKVLESLFNI RQNPKHESKT TSWRNVAKKM QSLGIDASSS SGEEPHPNTF VKDDSYHELR KGANDQWNVT KSYYQKAAEA YSKGGRAHAA YLSDKGRVAS
401: KQAQRADERA SQDIFVARNK GIENVVTIDL HGQHVKPAMK LLKLHLLFGS YVPSIQTLRV ITGCGASGFG KSKVKQSVVK LLEREGVRYC EENRGTLLIK
501: LDGGSREFSF LDTESDSDE
101: SVASGSSGQE TASTSEYGAG SSSSCSEDLT RDRWFKGSKQ SRVIAATGMV SSVIAKDYLK PNPVRKEFPM MERSKELCGN GKKAADREKA EQFLSSMLGD
201: DCELSMAVVR DVLCQCGYDV DMALNVLLDM SSSSTDDSLS GKCFGIGVSD SLAESSFDTD TSDCELFWGG DYSQRDYAKA LMSSQDPFAT TQGIDELGLP
301: QKVLESLFNI RQNPKHESKT TSWRNVAKKM QSLGIDASSS SGEEPHPNTF VKDDSYHELR KGANDQWNVT KSYYQKAAEA YSKGGRAHAA YLSDKGRVAS
401: KQAQRADERA SQDIFVARNK GIENVVTIDL HGQHVKPAMK LLKLHLLFGS YVPSIQTLRV ITGCGASGFG KSKVKQSVVK LLEREGVRYC EENRGTLLIK
501: LDGGSREFSF LDTESDSDE
Arabidopsis Description
PIPCSMR domain-containing protein At5g58720 [Source:UniProtKB/Swiss-Prot;Acc:O65573]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.