CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra021108.1-P	Field mustard	nucleus	97.06	97.06
CDY21839	Canola	nucleus	92.44	92.63
CDX97665	Canola	nucleus	75.21	74.12
CDX98557	Canola	nucleus	74.16	71.46
AT3G15390.1	Thale cress	nucleus	71.43	69.39
Solyc07g063240.2.1	Tomato	cytosol	33.61	30.83
GSMUA_Achr4P26110_001	Banana	cytosol	31.09	29.9
PGSC0003DMT400032412	Potato	cytosol	34.03	29.56
HORVU2Hr1G098380.15	Barley	cytosol, nucleus, plastid	15.13	28.35
Zm00001d051245_P001	Maize	nucleus	28.78	27.45
Os02t0639700-01	Rice	nucleus	26.89	26.23
OQU85378	Sorghum	cytosol	27.31	26.0
TraesCS2D01G415100.1	Wheat	nucleus	28.36	25.62
TraesCS2A01G417900.3	Wheat	nucleus	28.36	25.57
TraesCS2B01G436800.1	Wheat	cytosol, endoplasmic reticulum, nucleus	28.15	25.43
CDX71154	Canola	nucleus	21.64	23.41
HORVU2Hr1G098290.4	Barley	cytosol, nucleus	13.24	22.42
CDY61025	Canola	nucleus	21.22	20.32
CDY32688	Canola	nucleus	21.01	19.65
CDY02832	Canola	nucleus	20.8	18.97
TraesCS2B01G206400.1	Wheat	mitochondrion	20.17	11.12

Protein Annotations

EnsemblPlants:CDY20114	EnsemblPlantsGene:GSBRNA2T00009970001	InterPro:DUF1771	PANTHER:PTHR13308	PANTHER:PTHR13308:SF37	PFAM:PF08590
ProteinID:CDY20114	ProteinID:CDY20114.1	SEG:seg	SMART:SM01162	UniParc:UPI0004EE704B	UniProt:A0A078G3Z3
MapMan:35.1	:	:	:	:	:

Description

BnaA01g28880DBnaA01g28880D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G3Z3]

Coordinates

chrLK032103:+:239090..241846

Molecular Weight (calculated)

53207.7 Da

IEP (calculated)

5.487

GRAVY (calculated)

-0.720

Length

476 amino acids

Sequence
(BLAST)

001: MSMIGSSSHS DQDSRSLQVL LDAFGSRFSL DDITAAYHEA SKNVDVAGEI LFAMTEKTTE SDQVETNEAT HAKAKVLRPK KSSVSVGSVS SVIGKEYVRT
101: RPVSNPRQEA SKPVKIDSKD IPETEMWCQE SKEEANIISR APTEVEEFIV KMLGEGFQAS PELIHQILGV CGYDVKKSTE KLLDLTDTKK HADVGISNEL
201: MSKVDPQRPS GSTSCNQVEE SQSDGARNLT GSQEGGKDNS GLEKEVLEAL FSCPERYEEV PKLTRRFREM RGRAAGRPVI KPLEDPFQEG VVTVKQSSHT
301: SKQDEDDENE YKAHRKAVHE NLHEMKEYYG AAVEAFSKGE TERAQRLVEK GHFFGQKARE ADDKSIAKML QVKEEDNGST YKEDEVVIVN VNELEPREAL
401: RLLKLQLKNF TGIPSIKCLR VKLGDKKEDS KCKRRHTAIA KLLEGESIAW SKEDDGLVLM IRIDEIDPEK LSFAKK

Best Arabidopsis Sequence Match ( AT3G15390.1 )
(BLAST)

001: MSKIASSSNS DPDSRSLQVL LDTFGSRFSL DDIAAAYCQA SQNVDVAGEI LSAMAEKTPQ CDQVEMKTAT SKPTQVYVPK EVPRQEDSKA KVWRPKRNSI
101: SNGTVSSVIG KEYARTRPIS NAPKEATKPL KINSRDIPET EIWSEEMRKS NEGKISRAPT DVEEFIVKML GEGFQASQEV IHQVLGVCGY DVKKSTEKLL
201: DFSDTKKYAD VGISNEVMSK VDPQRQSTSC NQMELQKISQ SVGARTFTGS QEGRNAKNGL EKEVLEALFS GAERYVDKPK VTRHFGERRP GVAGRPVFKP
301: LEDPFQERVV AVKQSSNTSK EDDDENEFKA HRKAVREHLN QMKEYYGAAA EAFSKGETER AHRLVEKGHF FGQKAREADD KSVAKMIDVN QEDDSTYEED
401: EVVTVNMNEH EAKEALRLLK RQLIYFSGIS SFKYLRVQLG EKKEDFKSKR KHIVKLLEGE SIPWTEEDGG LVIMIRVDEI DPKKLSFAKK

Arabidopsis Description

SDE5Putative nuclear RNA export factor SDE5 [Source:UniProtKB/Swiss-Prot;Acc:Q9LUQ3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.