Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY20114 | Canola | nucleus | 97.06 | 97.06 |
| Bra027247.1-P | Field mustard | nucleus | 74.37 | 73.29 |
| AT3G15390.1 | Thale cress | nucleus | 70.8 | 68.78 |
| Solyc07g063240.2.1 | Tomato | cytosol | 34.03 | 31.21 |
| GSMUA_Achr4P26110_001 | Banana | cytosol | 31.3 | 30.1 |
| PGSC0003DMT400032412 | Potato | cytosol | 34.45 | 29.93 |
| HORVU2Hr1G098380.15 | Barley | cytosol, nucleus, plastid | 15.13 | 28.35 |
| Zm00001d051245_P001 | Maize | nucleus | 28.36 | 27.05 |
| Os02t0639700-01 | Rice | nucleus | 26.89 | 26.23 |
| OQU85378 | Sorghum | cytosol | 26.89 | 25.6 |
| TraesCS2D01G415100.1 | Wheat | nucleus | 28.15 | 25.43 |
| TraesCS2A01G417900.3 | Wheat | nucleus | 28.15 | 25.38 |
| TraesCS2B01G436800.1 | Wheat | cytosol, endoplasmic reticulum, nucleus | 27.94 | 25.24 |
| HORVU2Hr1G098290.4 | Barley | cytosol, nucleus | 13.03 | 22.06 |
| Bra006747.1-P | Field mustard | nucleus | 20.38 | 19.52 |
| Bra020357.1-P | Field mustard | nucleus | 21.43 | 19.5 |
| TraesCS2B01G206400.1 | Wheat | mitochondrion | 19.96 | 11.01 |
Protein Annotations
Description
AT3G15390 (E=4e-150) SDE5 | SDE5 (silencing defective 5)
Coordinates
chrA01:+:23946541..23949273
Molecular Weight (calculated)
53221.7 Da
IEP (calculated)
5.488
GRAVY (calculated)
-0.717
Length
476 amino acids
Sequence
(BLAST)
(BLAST)
001: MSMIASSSSH SDQDSRSLQV LLEAFGSRFS LDDITAAYHE ASQNVDVAGE ILFAMTEKTT ESDQVEKNEA THAKAKVLRP KKSSVSVGSV SSVIGKEYVR
101: TRPVSNPRQE ASKPVKIDSK DIPETEMWCE ESKEANIISR APTEVEEFIV KMLGEGFQAS PELIHQILGV CGYDVKKSTE KLLDLTDTKK HADVGISNEL
201: MSKVDPQRPS GSTSCNQVEE SQSDGARNLT GSQEGGKDNS GLEKEVLEAL FSCPERYEEV PKLTRRFREM RGRAAGRPVI KPLEDPFQEG VVTVKQSSHT
301: SKQDEDDENE YKAHRKAVHE NLHEMKEYYG AAVEAFSKGE TERAQRLVEK GHFFGQKARE ADDKSIAKML QVKEEDNGST YKEDEVVLVN VNELEPREAL
401: RLLKLQLKNF TGIPSIKCLR VKLGDKKEDS KCKRRHTAIA KLLEGESIAW SKEDDGLVLM IRIDEIDPEK LSFAKK
101: TRPVSNPRQE ASKPVKIDSK DIPETEMWCE ESKEANIISR APTEVEEFIV KMLGEGFQAS PELIHQILGV CGYDVKKSTE KLLDLTDTKK HADVGISNEL
201: MSKVDPQRPS GSTSCNQVEE SQSDGARNLT GSQEGGKDNS GLEKEVLEAL FSCPERYEEV PKLTRRFREM RGRAAGRPVI KPLEDPFQEG VVTVKQSSHT
301: SKQDEDDENE YKAHRKAVHE NLHEMKEYYG AAVEAFSKGE TERAQRLVEK GHFFGQKARE ADDKSIAKML QVKEEDNGST YKEDEVVLVN VNELEPREAL
401: RLLKLQLKNF TGIPSIKCLR VKLGDKKEDS KCKRRHTAIA KLLEGESIAW SKEDDGLVLM IRIDEIDPEK LSFAKK
001: MSKIASSSNS DPDSRSLQVL LDTFGSRFSL DDIAAAYCQA SQNVDVAGEI LSAMAEKTPQ CDQVEMKTAT SKPTQVYVPK EVPRQEDSKA KVWRPKRNSI
101: SNGTVSSVIG KEYARTRPIS NAPKEATKPL KINSRDIPET EIWSEEMRKS NEGKISRAPT DVEEFIVKML GEGFQASQEV IHQVLGVCGY DVKKSTEKLL
201: DFSDTKKYAD VGISNEVMSK VDPQRQSTSC NQMELQKISQ SVGARTFTGS QEGRNAKNGL EKEVLEALFS GAERYVDKPK VTRHFGERRP GVAGRPVFKP
301: LEDPFQERVV AVKQSSNTSK EDDDENEFKA HRKAVREHLN QMKEYYGAAA EAFSKGETER AHRLVEKGHF FGQKAREADD KSVAKMIDVN QEDDSTYEED
401: EVVTVNMNEH EAKEALRLLK RQLIYFSGIS SFKYLRVQLG EKKEDFKSKR KHIVKLLEGE SIPWTEEDGG LVIMIRVDEI DPKKLSFAKK
101: SNGTVSSVIG KEYARTRPIS NAPKEATKPL KINSRDIPET EIWSEEMRKS NEGKISRAPT DVEEFIVKML GEGFQASQEV IHQVLGVCGY DVKKSTEKLL
201: DFSDTKKYAD VGISNEVMSK VDPQRQSTSC NQMELQKISQ SVGARTFTGS QEGRNAKNGL EKEVLEALFS GAERYVDKPK VTRHFGERRP GVAGRPVFKP
301: LEDPFQERVV AVKQSSNTSK EDDDENEFKA HRKAVREHLN QMKEYYGAAA EAFSKGETER AHRLVEKGHF FGQKAREADD KSVAKMIDVN QEDDSTYEED
401: EVVTVNMNEH EAKEALRLLK RQLIYFSGIS SFKYLRVQLG EKKEDFKSKR KHIVKLLEGE SIPWTEEDGG LVIMIRVDEI DPKKLSFAKK
Arabidopsis Description
SDE5Putative nuclear RNA export factor SDE5 [Source:UniProtKB/Swiss-Prot;Acc:Q9LUQ3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.