Factsheet for Bra020357.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000304.1-P
Bra001302.1-P
Bra002437.1-P
Bra002438.1-P
Bra002606.1-P
Bra006738.1-P
Bra012753.1-P
Bra018304.1-P
Bra020223.1-P
Bra020224.1-P
Bra020343.1-P
Bra021651.1-P
Bra022807.1-P
Bra029780.1-P
Bra034075.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G58720.1	Bra018304.1-P	AT2G30580.1	21798944
AT5G58720.1	Bra021651.1-P	AT2G30580.1	21798944
AT5G58720.1	Bra022807.1-P	AT2G30580.1	21798944
AT5G58720.1	Bra000304.1-P	AT2G43370.1	21798944
AT5G58720.1	Bra001302.1-P	AT3G09630.1	21798944
AT5G58720.1	Bra029780.1-P	AT3G09630.1	21798944
AT5G58720.1	Bra034075.1-P	AT3G09630.1	21798944
AT5G58720.1	Bra012753.1-P	AT4G15900.1	10220464
AT5G58720.1	Bra002437.1-P	AT5G22890.1	21798944
AT5G58720.1	Bra002438.1-P	AT5G22890.1	21798944
AT5G58720.1	Bra020223.1-P	AT5G22890.1	21798944
AT5G58720.1	Bra020224.1-P	AT5G22890.1	21798944
AT5G58720.1	Bra002606.1-P	AT5G58950.1	21798944
AT5G58720.1	Bra006738.1-P	AT5G58950.1	21798944
AT5G58720.1	Bra020343.1-P	AT5G58950.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY32688	Canola	nucleus	89.29	91.75
Bra006747.1-P	Field mustard	nucleus	65.97	69.42
AT5G58720.1	Thale cress	nucleus	66.73	67.24
GSMUA_Achr7P14310_001	Banana	endoplasmic reticulum, golgi	9.94	55.91
VIT_06s0004g06590.t01	Wine grape	nucleus	43.98	47.03
Zm00001d017254_P002	Maize	cytosol	13.19	44.52
KRH30312	Soybean	nucleus	43.21	44.14
KRG98291	Soybean	nucleus	42.83	44.01
PGSC0003DMT400010646	Potato	nucleus	40.92	42.13
Solyc06g007110.2.1	Tomato	nucleus	39.96	41.06
GSMUA_Achr7P14320_001	Banana	nucleus	28.11	34.03
TraesCS3B01G177300.1	Wheat	plastid	34.23	33.21
TraesCS3A01G150300.2	Wheat	plastid	35.95	31.86
TraesCS3D01G158200.1	Wheat	plastid	35.56	31.53
OQU86087	Sorghum	nucleus	35.56	31.31
HORVU3Hr1G030600.8	Barley	mitochondrion	35.76	27.18
Zm00001d039321_P008	Maize	nucleus	33.84	27.06
Os01t0225100-01	Rice	nucleus	12.24	22.7
Bra021108.1-P	Field mustard	nucleus	19.5	21.43
Bra027247.1-P	Field mustard	nucleus	19.12	20.7

Protein Annotations

EnsemblPlants:Bra020357.1	EnsemblPlants:Bra020357.1-P	EnsemblPlantsGene:Bra020357	Gene3D:3.30.1370.110	InterPro:DUF1771	InterPro:IPR002625
InterPro:Smr_dom	InterPro:Smr_dom_sf	ncoils:Coil	PANTHER:PTHR13308	PANTHER:PTHR13308:SF22	PFAM:PF01713
PFAM:PF08590	PFscan:PS50828	SEG:seg	SMART:SM00463	SMART:SM01162	SUPFAM:SSF160443
UniParc:UPI0002542FFB	UniProt:M4DV14	MapMan:35.1	:	:	:

Description

AT5G58720 (E=5e-107) | PRLI-interacting factor, putative

Coordinates

chrA02:+:6384391..6387289

Molecular Weight (calculated)

56555.8 Da

IEP (calculated)

5.966

GRAVY (calculated)

-0.636

Length

523 amino acids

Sequence
(BLAST)

001: MKHKSQQQKR KKKRSSAAPS GGGAAASDVE EERKRESEKV EKQSIESLME AFCSVSVEEA TAAYREAGGD LNRAADVLSS LVDEDPSTIS VASGSSGQET
101: GSTSEYGAGS SSSCGEDLTR ERWFKGGKQN RVVAATGMVS SVIAKDYLKP NPVKKKEFPL AERSSYEVCG NGKKAGDREK AEQFLSSMLG DDCELSMAVV
201: RDVLCQCGYD VDMALNVLLD MSSSSTDDSL SGRCSGIGLS DSPAESSFDI DTSESEPSFW GGYSPRDYSK ALMSSADPFA TSQGSSADPF ATSYGSSDSE
301: PCDPQKVLES LFNIPRSPKH EPKAMNWRNV AKKMQSLGCI DGSSSSGEGY QPTTLVKDDG YHELRKGAND QWNVTKSYYQ KAAEAYSKGG RAHAAYLSEK
401: GRTASKLAQR ADERASKDIF VARNKGIENV ITIDLHGQHV KQAMKLLKMH LLLGSYVPSI QTLRVITGCG SHGFGKSKVK QSVTNLLERE GVRYCEENKG
501: TLLIKLEGCS REFSFLDTES DSE

Best Arabidopsis Sequence Match ( AT5G58720.1 )
(BLAST)

001: MKQKNQHKKK KKRSCAAKPS GDGTTSDGNK KDVEEERKDG EGKREIENVG KNFIESLMEA FCSVSMEEAM AAYKEAGGDL NKAAEILSDL VESGDDPSTS
101: SVASGSSGQE TASTSEYGAG SSSSCSEDLT RDRWFKGSKQ SRVIAATGMV SSVIAKDYLK PNPVRKEFPM MERSKELCGN GKKAADREKA EQFLSSMLGD
201: DCELSMAVVR DVLCQCGYDV DMALNVLLDM SSSSTDDSLS GKCFGIGVSD SLAESSFDTD TSDCELFWGG DYSQRDYAKA LMSSQDPFAT TQGIDELGLP
301: QKVLESLFNI RQNPKHESKT TSWRNVAKKM QSLGIDASSS SGEEPHPNTF VKDDSYHELR KGANDQWNVT KSYYQKAAEA YSKGGRAHAA YLSDKGRVAS
401: KQAQRADERA SQDIFVARNK GIENVVTIDL HGQHVKPAMK LLKLHLLFGS YVPSIQTLRV ITGCGASGFG KSKVKQSVVK LLEREGVRYC EENRGTLLIK
501: LDGGSREFSF LDTESDSDE

Arabidopsis Description

PIPCSMR domain-containing protein At5g58720 [Source:UniProtKB/Swiss-Prot;Acc:O65573]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.