Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra020357.1-P | Field mustard | nucleus | 91.75 | 89.29 |
| CDY02832 | Canola | nucleus | 86.44 | 84.29 |
| CDX71154 | Canola | nucleus | 64.05 | 74.09 |
| CDY61025 | Canola | nucleus | 66.4 | 68.01 |
| AT5G58720.1 | Thale cress | nucleus | 69.16 | 67.82 |
| GSMUA_Achr7P14310_001 | Banana | endoplasmic reticulum, golgi | 10.22 | 55.91 |
| VIT_06s0004g06590.t01 | Wine grape | nucleus | 45.58 | 47.44 |
| KRH30312 | Soybean | nucleus | 45.19 | 44.92 |
| KRG98291 | Soybean | nucleus | 44.79 | 44.79 |
| Zm00001d017254_P002 | Maize | cytosol | 13.56 | 44.52 |
| PGSC0003DMT400010646 | Potato | nucleus | 41.06 | 41.14 |
| Solyc06g007110.2.1 | Tomato | nucleus | 40.27 | 40.27 |
| GSMUA_Achr7P14320_001 | Banana | nucleus | 28.09 | 33.1 |
| TraesCS3B01G177300.1 | Wheat | plastid | 34.38 | 32.47 |
| TraesCS3A01G150300.2 | Wheat | plastid | 36.15 | 31.19 |
| TraesCS3D01G158200.1 | Wheat | plastid | 35.76 | 30.85 |
| OQU86087 | Sorghum | nucleus | 35.95 | 30.81 |
| HORVU3Hr1G030600.8 | Barley | mitochondrion | 35.95 | 26.6 |
| Zm00001d039321_P008 | Maize | nucleus | 33.99 | 26.45 |
| Os01t0225100-01 | Rice | nucleus | 11.79 | 21.28 |
| CDY21839 | Canola | nucleus | 19.84 | 21.26 |
| CDY20114 | Canola | nucleus | 19.65 | 21.01 |
| CDX97665 | Canola | nucleus | 19.06 | 20.08 |
| CDX98557 | Canola | nucleus | 18.86 | 19.43 |
Protein Annotations
| EnsemblPlants:CDY32688 | EnsemblPlantsGene:GSBRNA2T00052731001 | Gene3D:3.30.1370.110 | InterPro:DUF1771 | InterPro:IPR002625 | InterPro:Smr_dom |
| InterPro:Smr_dom_sf | PANTHER:PTHR13308 | PANTHER:PTHR13308:SF22 | PFAM:PF01713 | PFAM:PF08590 | PFscan:PS50828 |
| ProteinID:CDY32688 | ProteinID:CDY32688.1 | SEG:seg | SMART:SM00463 | SMART:SM01162 | SUPFAM:SSF160443 |
| UniParc:UPI0004EEF655 | UniProt:A0A078H764 | MapMan:35.1 | : | : | : |
Description
BnaA02g07500DBnaA02g07500D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H764]
Coordinates
chrLK032298:+:199556..202870
Molecular Weight (calculated)
55187.3 Da
IEP (calculated)
7.146
GRAVY (calculated)
-0.662
Length
509 amino acids
Sequence
(BLAST)
(BLAST)
001: MKHKSQQQKR KKKRSSAAPS GGGAAAAASD GNKKDVERES EKVEKQNIES LMEAFCSVSV EEATAAYREA GGDLNRAADV LSNLTGSTSE YGAGSSSSCG
101: EDLTRERWFK GGKQNRVVAA TGMVSSVIAK DYLKPNPVRK KEFPLAERSS YEVCGNGKKA GDREKAEQFL SSMLGDDCEL SMAVVRDVLC QCGYDVDMAL
201: NVLLDMSSSS TDDSLSGRCS GIGLSDSPAE SSFDIDTSES EPSFWGGYSQ RDYSKALMRS SADPFATSQG SSADPFATSY GSSDSEPCDP QKVLESLFNI
301: PRSPKHEPKA MNWRNVAKKM QSLGGIDGSS SSGEGYQPNT LVKDDGYHEL RKGANDQWNV TKSYYQKAAE AYSKGGRAHA AYLSEKGRTA SKLAQRADER
401: ASKDIFVARN KGIENVITID LHGQHVKQAM KLLKMHLLLG SYVPSIQTLR VITGCGSHGF GKSKVKQSVT NLLEREGVRY CEENKGTLLI KLEGCSREFS
501: FLDTESDSE
101: EDLTRERWFK GGKQNRVVAA TGMVSSVIAK DYLKPNPVRK KEFPLAERSS YEVCGNGKKA GDREKAEQFL SSMLGDDCEL SMAVVRDVLC QCGYDVDMAL
201: NVLLDMSSSS TDDSLSGRCS GIGLSDSPAE SSFDIDTSES EPSFWGGYSQ RDYSKALMRS SADPFATSQG SSADPFATSY GSSDSEPCDP QKVLESLFNI
301: PRSPKHEPKA MNWRNVAKKM QSLGGIDGSS SSGEGYQPNT LVKDDGYHEL RKGANDQWNV TKSYYQKAAE AYSKGGRAHA AYLSEKGRTA SKLAQRADER
401: ASKDIFVARN KGIENVITID LHGQHVKQAM KLLKMHLLLG SYVPSIQTLR VITGCGSHGF GKSKVKQSVT NLLEREGVRY CEENKGTLLI KLEGCSREFS
501: FLDTESDSE
001: MKQKNQHKKK KKRSCAAKPS GDGTTSDGNK KDVEEERKDG EGKREIENVG KNFIESLMEA FCSVSMEEAM AAYKEAGGDL NKAAEILSDL VESGDDPSTS
101: SVASGSSGQE TASTSEYGAG SSSSCSEDLT RDRWFKGSKQ SRVIAATGMV SSVIAKDYLK PNPVRKEFPM MERSKELCGN GKKAADREKA EQFLSSMLGD
201: DCELSMAVVR DVLCQCGYDV DMALNVLLDM SSSSTDDSLS GKCFGIGVSD SLAESSFDTD TSDCELFWGG DYSQRDYAKA LMSSQDPFAT TQGIDELGLP
301: QKVLESLFNI RQNPKHESKT TSWRNVAKKM QSLGIDASSS SGEEPHPNTF VKDDSYHELR KGANDQWNVT KSYYQKAAEA YSKGGRAHAA YLSDKGRVAS
401: KQAQRADERA SQDIFVARNK GIENVVTIDL HGQHVKPAMK LLKLHLLFGS YVPSIQTLRV ITGCGASGFG KSKVKQSVVK LLEREGVRYC EENRGTLLIK
501: LDGGSREFSF LDTESDSDE
101: SVASGSSGQE TASTSEYGAG SSSSCSEDLT RDRWFKGSKQ SRVIAATGMV SSVIAKDYLK PNPVRKEFPM MERSKELCGN GKKAADREKA EQFLSSMLGD
201: DCELSMAVVR DVLCQCGYDV DMALNVLLDM SSSSTDDSLS GKCFGIGVSD SLAESSFDTD TSDCELFWGG DYSQRDYAKA LMSSQDPFAT TQGIDELGLP
301: QKVLESLFNI RQNPKHESKT TSWRNVAKKM QSLGIDASSS SGEEPHPNTF VKDDSYHELR KGANDQWNVT KSYYQKAAEA YSKGGRAHAA YLSDKGRVAS
401: KQAQRADERA SQDIFVARNK GIENVVTIDL HGQHVKPAMK LLKLHLLFGS YVPSIQTLRV ITGCGASGFG KSKVKQSVVK LLEREGVRYC EENRGTLLIK
501: LDGGSREFSF LDTESDSDE
Arabidopsis Description
PIPCSMR domain-containing protein At5g58720 [Source:UniProtKB/Swiss-Prot;Acc:O65573]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.