CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX72718
CDX76092
CDX79732
CDX80461
CDX81436
CDX84503
CDX90305
CDX96185
CDY02176
CDY02941
CDY05402
CDY05452
CDY07084
CDY08148
CDY12116
CDY14351
CDY20218
CDY20328
CDY22394
CDY22958
CDY23090
CDY24176
CDY27030
CDY43799
CDY45585
CDY46773
CDY47646
CDY49453
CDY56908
CDY59084
CDY69515

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G43370.1	CDY47646	AT1G23860.1	15987817
AT2G43370.1	CDY59084	AT1G23860.1	15987817
AT2G43370.1	CDY20328	AT2G24590.1	21798944
AT2G43370.1	CDY45585	AT2G24590.1	21798944
AT2G43370.1	CDX79732	AT2G37340.1	15987817
AT2G43370.1	CDY46773	AT2G37340.1	15987817
AT2G43370.1	CDY07084	AT3G13570.1	15987817
AT2G43370.1	CDY24176	AT3G13570.1	15987817
AT2G43370.1	CDY08148	AT3G49580.1	21798944
AT2G43370.1	CDX76092	AT3G55460.1	15987817
AT2G43370.1	CDY02941	AT3G55460.1	15987817
AT2G43370.1	CDX81436	AT3G61860.1	15987817
AT2G43370.1	CDY22958	AT3G61860.1	15987817
AT2G43370.1	CDX72718	AT4G39050.1	21798944
AT2G43370.1	CDX90305	AT4G39050.1	21798944
AT2G43370.1	CDY12116	AT4G39050.1	21798944
AT2G43370.1	CDY22394	AT4G39050.1	21798944
AT2G43370.1	CDX80461	AT5G24660.1	21798944
AT2G43370.1	CDY05402	AT5G24660.1	21798944
AT2G43370.1	CDY05452	AT5G24660.1	21798944
AT2G43370.1	CDY69515	AT5G24660.1	21798944
AT2G43370.1	CDX96185	AT5G53060.1	21798944
AT2G43370.1	CDY27030	AT5G53060.1	21798944
AT2G43370.1	CDY49453	AT5G53060.1	21798944
AT2G43370.1	CDY56908	AT5G53060.1	21798944
AT2G43370.1	CDY14351	AT5G53800.1	21798944
AT2G43370.1	CDY20218	AT5G53800.1	21798944
AT2G43370.1	CDY02176	AT5G61010.1	21798944
AT2G43370.1	CDY23090	AT5G61010.1	21798944
AT2G43370.1	CDX84503	AT5G64200.2	15987817
AT2G43370.1	CDY43799	AT5G64200.2	15987817

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX83484	Canola	nucleus	87.15	86.34
Bra000304.1-P	Field mustard	nucleus	82.45	81.93
CDY22251	Canola	cytosol	34.8	72.08
AT2G43370.1	Thale cress	nucleus	68.03	65.17
CDY14697	Canola	cytosol, mitochondrion	36.36	64.09
GSMUA_Achr8P09080_001	Banana	nucleus	54.55	63.04
CDY23361	Canola	endoplasmic reticulum	49.53	61.96
VIT_05s0102g00080.t01	Wine grape	nucleus	58.31	54.71
KRH46935	Soybean	nucleus	53.92	52.6
KRH01744	Soybean	nucleus	57.05	52.45
Solyc09g098390.2.1	Tomato	nucleus	56.74	50.99
PGSC0003DMT400055636	Potato	nucleus	55.49	50.28
Os09t0513700-01	Rice	nucleus	55.17	46.93
TraesCS5D01G304800.1	Wheat	nucleus	57.99	44.15
TraesCS5A01G298000.1	Wheat	nucleus	58.31	41.8
EER97037	Sorghum	nucleus	57.05	41.65
TraesCS5B01G297000.2	Wheat	nucleus	59.56	40.43
HORVU5Hr1G078170.27	Barley	nucleus	54.86	37.88
Zm00001d021137_P002	Maize	nucleus	45.45	29.65
CDY57127	Canola	plasma membrane	26.02	19.67
CDX81371	Canola	nucleus	25.08	19.0
CDY53849	Canola	nucleus, plastid	10.34	16.18
CDY30756	Canola	nucleus, plastid	20.38	15.66

Protein Annotations

MapMan:16.4.4.1.1	Gene3D:3.30.70.330	GO:A0A078I2E7	UniProt:A0A078I2E7	EnsemblPlants:CDY44222	ProteinID:CDY44222
ProteinID:CDY44222.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	EnsemblPlantsGene:GSBRNA2T00079715001
InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR13952
PANTHER:PTHR13952:SF6	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI0004EB16C1
SEG:seg	InterPro:snRNP35_RRM	:	:	:	:

Description

BnaC03g24140DBnaC03g24140D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I2E7]

Coordinates

chrLK032583:+:25256..27069

Molecular Weight (calculated)

36670.9 Da

IEP (calculated)

10.256

GRAVY (calculated)

-1.216

Length

319 amino acids

Sequence
(BLAST)

001: MSGGGNNVVN KVFYATSYHP IQAGSIDGTD VAPHDNGVRR ALLCYNAGLY DPFGDSKAAG DPYCTLFVGR ISHLTTEDTL REAMSKHGKV KSLRLVRHIV
101: TGASRGYAFV EYETEKEMRR AYEDAHHSFI DGREIIVDYN RQQLMPGWIP RRLGGGLGGR KESGQLRFGG RERPFRAPLR PIPHEDLKKL GIQLPPEGRY
201: MSRTQIPSPP RRKGCVSDRE EGYYYRGEER SPVKREGSYH SHRESESAHR RRNKDKEERS RIESRSDRKD RYGDKEDVSG SKRSNHGEER PHKRHKHRRP
301: LHHRRSSSRD HHHSSDLDT

Best Arabidopsis Sequence Match ( AT2G43370.1 )
(BLAST)

001: MSGGGNNVVN KVFYATSYHP IQAGSIDGTD VAPHDNGVRR ALLCYNAGLY DPSGDSKAVG DPYCTLFVGR LSHHTTEDTL REVMSKYGRI KNLRLVRHIV
101: TGASRGYGFV EYETEKEMLR AYEDAHHSLI DGREIIVDYN RQQLMPGWIP RRLGGGLGGR KESGQLRFGG RDRPFRAPLR PIPHEDLKKL GIQLPPEGRY
201: MSRTQIPSPP RRKGSVSDRE EEYYREKSSV EREEEFKERS SLRSYHSHRS SAHTHSSHRR RSKDREECSR EESRSDRKER ARGMEDRYGD NKGEVSGSKR
301: SKRSEEDRSR KRHKHLPSHH HRRSYSQDHH SSD

Arabidopsis Description

SNRNP35U11/U12 small nuclear ribonucleoprotein 35 kDa protein [Source:UniProtKB/Swiss-Prot;Acc:Q8VY74]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.