CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3
nucleus 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, secretory
BaCelLo:	secretory
MultiLoc:	nucleus
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX72313
CDX76092
CDX81371
CDX83484
CDX84503
CDY02941
CDY07084
CDY10512
CDY13444
CDY14697
CDY22251
CDY23361
CDY24176
CDY30756
CDY43799
CDY44222
CDY47646
CDY53849
CDY57127
CDY59084
CDY72459

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G37340.1	CDY47646	AT1G23860.1	18674533
AT2G37340.1	CDY59084	AT1G23860.1	18674533
AT2G37340.1	CDY10512	AT1G53720.1	16497658
AT2G37340.1	CDY72459	AT1G53720.1	16497658
AT2G37340.1	CDX83484	AT2G43370.1	15987817
AT2G37340.1	CDY14697	AT2G43370.1	15987817
AT2G37340.1	CDY22251	AT2G43370.1	15987817
AT2G37340.1	CDY23361	AT2G43370.1	15987817
AT2G37340.1	CDY44222	AT2G43370.1	15987817
AT2G37340.1	CDY07084	AT3G13570.1	18674533
AT2G37340.1	CDY24176	AT3G13570.1	18674533
AT2G37340.1	CDX81371	AT3G50670.1	18674533
AT2G37340.1	CDY30756	AT3G50670.1	18674533
AT2G37340.1	CDY53849	AT3G50670.1	18674533
AT2G37340.1	CDY57127	AT3G50670.1	18674533
AT2G37340.1	CDX76092	AT3G55460.1	18674533
AT2G37340.1	CDY02941	AT3G55460.1	18674533
AT2G37340.1	CDX76092	AT3G55460.1	21798944
AT2G37340.1	CDY02941	AT3G55460.1	21798944
AT2G37340.1	CDX72313	AT4G31580.1	18674533
AT2G37340.1	CDY13444	AT4G31580.1	18674533
AT2G37340.1	CDX84503	AT5G64200.2	18674533
AT2G37340.1	CDY43799	AT5G64200.2	18674533

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra023114.1-P	Field mustard	nucleus	98.42	98.42
CDX79732	Canola	nucleus	91.14	98.29
AT2G37340.1	Thale cress	nucleus	82.91	90.34
CDX78183	Canola	nucleus	73.73	82.33
CDX73550	Canola	nucleus	73.1	81.34
CDY07586	Canola	mitochondrion, nucleus	73.73	80.9
CDY52755	Canola	mitochondrion, nucleus	73.73	80.07
KRH67593	Soybean	endoplasmic reticulum	63.61	70.03
KRG95876	Soybean	nucleus	63.29	69.69
CDX80835	Canola	nucleus	54.75	65.28
CDY41599	Canola	nucleus	58.54	64.46
PGSC0003DMT400060435	Potato	nucleus	61.08	64.33
CDY11223	Canola	nucleus	53.48	64.26
CDY44717	Canola	nucleus	59.18	63.39
KRH67596	Soybean	nucleus	59.81	63.21
KRG95883	Soybean	nucleus	58.23	61.95
EES00292	Sorghum	nucleus	55.38	59.12
VIT_08s0040g02860.t01	Wine grape	nucleus	49.05	58.27
KXG21152	Sorghum	nucleus	57.28	58.01
GSMUA_Achr10P...	Banana	nucleus	59.49	57.85
Solyc05g054920.2.1	Tomato	nucleus	61.39	57.57
Solyc09g005980.2.1	Tomato	nucleus	57.28	57.46
PGSC0003DMT400061471	Potato	nucleus	56.65	56.83
Os01t0155600-01	Rice	nucleus	57.59	56.17
Os05t0120100-01	Rice	mitochondrion, nucleus	57.28	56.04
GSMUA_Achr6P15450_001	Banana	nucleus	58.86	55.19
Os03t0285900-01	Rice	nucleus	57.28	54.85
TraesCS1A01G108000.2	Wheat	nucleus	48.1	54.68
TraesCS1D01G111000.2	Wheat	nucleus	49.05	54.01
TraesCS1B01G065900.2	Wheat	nucleus	57.91	53.67
TraesCS1B01G130200.3	Wheat	nucleus	48.42	53.31
TraesCS3B01G151100.1	Wheat	nucleus	54.43	53.25
TraesCS1D01G051900.1	Wheat	nucleus	57.59	53.22
KXG21387	Sorghum	nucleus	44.62	53.21
Zm00001d011004_P008	Maize	nucleus	56.65	52.96
TraesCS1A01G049700.1	Wheat	nucleus	57.28	52.92
EES18924	Sorghum	nucleus	56.96	52.79
TraesCS3D01G134500.1	Wheat	nucleus	54.11	52.78
Zm00001d011005_P005	Maize	nucleus	58.54	52.41
HORVU1Hr1G024060.21	Barley	nucleus	49.37	52.17
TraesCS3A01G308000.1	Wheat	nucleus	54.43	51.65
KRH42195	Soybean	endoplasmic reticulum	43.67	50.18
HORVU1Hr1G009950.7	Barley	nucleus, plastid	58.23	50.0
Zm00001d037543_P001	Maize	nucleus	27.85	48.89
Zm00001d035552_P001	Maize	endoplasmic reticulum, extracellular, golgi	55.38	47.17
OQU77498	Sorghum	nucleus	15.51	44.14
KRH58317	Soybean	nucleus	29.75	42.92
Os05t0162600-01	Rice	nucleus	43.67	40.83
Zm00001d035551_P007	Maize	nucleus	42.72	34.44
CDY66028	Canola	cytosol	27.53	34.39
CDX91319	Canola	nucleus	32.28	34.11
CDY22050	Canola	nucleus	32.28	33.01
CDY50385	Canola	nucleus	31.96	32.79
CDX97264	Canola	nucleus	31.65	32.79
CDX86974	Canola	nucleus	26.27	30.86
CDY00202	Canola	nucleus	26.58	30.55
CDX68538	Canola	nucleus	26.58	29.79
KXG21391	Sorghum	nucleus	36.08	28.5
CDY08133	Canola	cytosol	25.63	28.03
CDX94214	Canola	cytosol	17.72	28.0
CDY45333	Canola	nucleus, plastid, vacuole	10.76	27.87
CDY05936	Canola	nucleus	25.95	27.8
CDX95008	Canola	nucleus	27.22	27.13
CDY61855	Canola	nucleus	27.85	14.89

Protein Annotations

MapMan:16.4.6.5	Gene3D:3.30.70.330	Gene3D:4.10.60.10	GO:A0A078IC09	UniProt:A0A078IC09	EnsemblPlants:CDY46773
ProteinID:CDY46773	ProteinID:CDY46773.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488
GO:GO:0008270	EnsemblPlantsGene:GSBRNA2T00086101001	InterPro:IPR000504	InterPro:IPR001878	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf
PFAM:PF00076	PFAM:PF00098	PFscan:PS50102	PFscan:PS50158	PANTHER:PTHR23147	PANTHER:PTHR23147:SF21
InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00343	SMART:SM00360	SUPFAM:SSF54928	SUPFAM:SSF57756
SignalP:SignalP-noTM	UniParc:UPI0004EE450C	InterPro:Znf_CCHC	InterPro:Znf_CCHC_sf	SEG:seg	:

Description

BnaA03g17170DBnaA03g17170D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IC09]

Coordinates

chrLK032684:-:164562..167101

Molecular Weight (calculated)

35847.4 Da

IEP (calculated)

10.418

GRAVY (calculated)

-1.321

Length

316 amino acids

Sequence
(BLAST)

001: MLLLCWVCEV LSLSPKNSNL IMPRYDDRYG NTRLYVGHLS SRTRTRDLER LFNRYGRVRD VDMKRDYAFV EFSDPRDADD ARHYLDGRDF DGSRITVEFS
101: RGAPRGSRDY DSRGPPPGSG RCFNCGLDGH WARDCTAGDW KNKCYRCGER GHIERNCKNS PKKLRRSGSY SRSPVRSRSP RRRRSPSRSR SLSRSRSYSR
201: SRSPVKRRER SAEERSRSPK RMEDSLSPRG RDRSPIMDDE GSPRIIDGTP PPSPKLEKPA GSDHDGGSSP QDNGNGRNTV ASPAVGRSAD SPREDRSPVD
301: DDYEANRASP RGSESP

Best Arabidopsis Sequence Match ( AT2G37340.1 )
(BLAST)

001: MPRYDDRYGN TRLYVGRLSS RTRTRDLERL FSRYGRVRDV DMKRDYAFVE FGDPRDADDA RHYLDGRDFD GSRITVEFSR GAPRGSRDFD SRGPPPGAGR
101: CFNCGVDGHW ARDCTAGDWK NKCYRCGERG HIERNCKNSP KKLRRSGSYS RSPVRSRSPR RRRSPSRSLS RSRSYSRSRS PVRRRERSVE ERSRSPKRMD
201: DSLSPRARDR SPVLDDEGSP KIIDGSPPPS PKLQKEVGSD RDGGSPQDNG RNSVVSPVVG AGGDSSKEDR SPVDDDYEPN RTSPRGSESP

Arabidopsis Description

RS2Z33Serine/arginine-rich splicing factor RS2Z33 [Source:UniProtKB/Swiss-Prot;Acc:Q8VYA5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.