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Soybean
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Soybean
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum

Predictor Summary:
  • nucleus 4
  • cytosol 1
  • plastid 1
  • mitochondrion 2
Predictors GFP MS/MS Papers
Winner Takes All:endoplasmic reticulum
Any Predictor:cytosol, mitochondrion, nucleus, plastid
BaCelLo:nucleus
EpiLoc:cytosol
MultiLoc:nucleus
Plant-mPloc:plastid
PProwler:mitochondrion
TargetP:mitochondrion
WoLF PSORT:nucleus
YLoc:nucleus
 nucleus: 21132161
endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913
msms PMID: 21132161 doi
B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick
Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov
msms PMID: 28499913 doi
S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
msms PMID: 27224218 doi
X Wang, S Komatsu
Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.
PPI

Inferred distinct locusB in Crop

locusBlocations
KRG93223
KRG96443
KRG99320
KRH01744
KRH02172
KRH04931
KRH13056
KRH15102
KRH16160
KRH28659
KRH38014
KRH42160
KRH45698
KRH46935
KRH50944
KRH58277
KRH68188
KRH69931
KRH73034
KRH76798

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT2G37340.1 KRG96443 AT1G02840.1 18674533
AT2G37340.1 KRH68188 AT1G02840.1 18674533
AT2G37340.1 KRG99320 AT1G23860.1 18674533
AT2G37340.1 KRH45698 AT1G23860.1 18674533
AT2G37340.1 KRG93223 AT1G53720.1 16497658
AT2G37340.1 KRH13056 AT1G53720.1 16497658
AT2G37340.1 KRH01744 AT2G43370.1 15987817
AT2G37340.1 KRH46935 AT2G43370.1 15987817
AT2G37340.1 KRH38014 AT3G13570.1 18674533
AT2G37340.1 KRH28659 AT3G50670.1 18674533
AT2G37340.1 KRH69931 AT3G50670.1 18674533
AT2G37340.1 KRH76798 AT3G50670.1 18674533
AT2G37340.1 KRH15102 AT3G55460.1 18674533
AT2G37340.1 KRH73034 AT3G55460.1 18674533
AT2G37340.1 KRH15102 AT3G55460.1 21798944
AT2G37340.1 KRH73034 AT3G55460.1 21798944
AT2G37340.1 KRH04931 AT4G31580.1 18674533
AT2G37340.1 KRH16160 AT4G31580.1 18674533
AT2G37340.1 KRH02172 AT5G18810.1 18674533
AT2G37340.1 KRH50944 AT5G18810.1 18674533
AT2G37340.1 KRH42160 AT5G64200.2 18674533
AT2G37340.1 KRH58277 AT5G64200.2 18674533
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRG95876 Soybean nucleus 97.21 97.21
KRH67596 Soybean nucleus 85.37 81.94
KRG95883 Soybean nucleus 82.58 79.8
CDX73550 Canola nucleus 68.29 69.01
CDX78183 Canola nucleus 67.94 68.9
AT3G53500.2 Thale cress mitochondrion, nucleus 67.94 68.66
CDX79732 Canola nucleus 69.69 68.26
VIT_08s0040g02860.t01 Wine grape nucleus 62.37 67.29
AT2G37340.1 Thale cress nucleus 67.6 66.9
CDY07586 Canola mitochondrion, nucleus 66.9 66.67
CDY52755 Canola mitochondrion, nucleus 66.9 65.98
Bra003139.1-P Field mustard mitochondrion, nucleus 66.9 65.98
CDX80835 Canola nucleus 60.63 65.66
Bra007004.1-P Field mustard nucleus 67.94 65.66
CDY11223 Canola nucleus 59.23 64.64
Bra023114.1-P Field mustard nucleus 70.38 63.92
KRH42195 Soybean endoplasmic reticulum 60.98 63.64
CDY46773 Canola nucleus 70.03 63.61
Solyc09g005980.2.1 Tomato nucleus 68.29 62.22
KXG21152 Sorghum nucleus 67.6 62.18
PGSC0003DMT400061471 Potato nucleus 67.94 61.9
EES00292 Sorghum nucleus 63.76 61.82
Bra005756.1-P Field mustard nucleus 49.48 61.74
GSMUA_Achr10P... Banana nucleus 68.64 60.62
Os01t0155600-01 Rice nucleus 66.9 59.26
Os05t0120100-01 Rice mitochondrion, nucleus 66.55 59.13
Os03t0285900-01 Rice nucleus 66.9 58.18
GSMUA_Achr6P15450_001 Banana nucleus 68.29 58.16
TraesCS1B01G065900.2 Wheat nucleus 68.29 57.48
TraesCS1D01G051900.1 Wheat nucleus 67.94 57.02
TraesCS1A01G049700.1 Wheat nucleus 67.94 57.02
TraesCS3B01G151100.1 Wheat nucleus 62.72 55.73
Zm00001d011004_P008 Maize nucleus 65.16 55.33
KRH58317 Soybean nucleus 42.16 55.25
EES18924 Sorghum nucleus 65.51 55.13
TraesCS1D01G111000.2 Wheat nucleus 55.05 55.05
TraesCS1A01G108000.2 Wheat nucleus 53.31 55.04
TraesCS3D01G134500.1 Wheat nucleus 62.02 54.94
TraesCS1B01G130200.3 Wheat nucleus 54.7 54.7
Zm00001d011005_P005 Maize nucleus 66.9 54.39
HORVU1Hr1G024060.21 Barley nucleus 56.45 54.18
TraesCS3A01G308000.1 Wheat nucleus 62.72 54.05
HORVU1Hr1G009950.7 Barley nucleus, plastid 67.6 52.72
KXG21387 Sorghum nucleus 46.69 50.57
Zm00001d035552_P001 Maize endoplasmic reticulum, extracellular, golgi 64.11 49.6
Zm00001d037543_P001 Maize nucleus 29.97 47.78
OQU77498 Sorghum nucleus 17.07 44.14
Os05t0162600-01 Rice nucleus 50.52 42.9
Zm00001d035551_P007 Maize nucleus 47.74 34.95
KRG96443 Soybean nucleus 32.75 30.03
KRH64312 Soybean nucleus 27.53 29.59
KRH75557 Soybean cytosol 11.15 28.83
KRH53616 Soybean nucleus 25.78 28.14
KXG21391 Sorghum nucleus 38.68 27.75
KRH68188 Soybean nucleus 28.22 27.09
KRG92904 Soybean nucleus 25.78 26.81
Protein Annotations
EntrezGene:100812698MapMan:16.4.6.5Gene3D:3.30.70.330Gene3D:4.10.60.10EMBL:ACUP02002069EnsemblPlantsGene:GLYMA_03G175400
GO:GO:0003674GO:GO:0003676GO:GO:0003723GO:GO:0005488GO:GO:0008270UniProt:I1JPG3
InterPro:IPR000504InterPro:IPR001878InterPro:IPR012677EnsemblPlants:KRH67593ProteinID:KRH67593ProteinID:KRH67593.1
InterPro:Nucleotide-bd_a/b_plait_sfPFAM:PF00076PFAM:PF00098PFscan:PS50102PFscan:PS50158PANTHER:PTHR23147
PANTHER:PTHR23147:SF21InterPro:RBD_domain_sfInterPro:RRM_domSMART:SM00343SMART:SM00360SUPFAM:SSF54928
SUPFAM:SSF57756UniParc:UPI000233A918InterPro:Znf_CCHCInterPro:Znf_CCHC_sfSEG:seg:
Description
hypothetical protein
Coordinates
chr3:+:38887182..38890047
Molecular Weight (calculated)
32968.6 Da
IEP (calculated)
10.823
GRAVY (calculated)
-1.683
Length
287 amino acids
Sequence
(BLAST)
001: MPRYDDKYGN TRLYVGHLSS RTRSRDLERA FSRYGRVRGV DMKNDFAFVD FSDPRDADDA RYNLDGRDVD GSRIIVEFAK GAPRGSREYL GRGPPPGSGR
101: CFNCGLDGHW ARDCKAGDWK NKCYRCGERG HIERNCKNSP KKLSTRRGRS YSRSPVRSHS PRRGRSRDRS YSRDRSYSRS RSPVRREESP VREDRSQSPQ
201: HKNSPQPSKT RKHSPSPDRS PQRRGDTSPD NDRLSRSPAR DREDRGYDSP KVNGRSGSPS RSPRDDDRSP IDDEDNHRHS PRGSESP
Best Arabidopsis Sequence Match ( AT3G53500.2 )
(BLAST)
001: MPRYDDRYGN TRLYVGRLSS RTRTRDLERL FSRYGRVRDV DMKRDYAFVE FSDPRDADDA RYYLDGRDFD GSRITVEASR GAPRGSRDNG SRGPPPGSGR
101: CFNCGVDGHW ARDCTAGDWK NKCYRCGERG HIERNCKNSP SPKKARQGGS YSRSPVKSRS PRRRRSPSRS RSYSRGRSYS RSRSPVRREK SVEDRSRSPK
201: AMERSVSPKG RDQSLSPDRK VIDASPKRGS DYDGSPKENG NGRNSASPIV GGGESPVGLN GQDRSPIDDE AELSRPSPKG SESP
Arabidopsis Description
RS2Z32RSZ32 [Source:UniProtKB/TrEMBL;Acc:A0A178V7M8]
SUBAcon: [mitochondrion,nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.