Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- plastid 1
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH45698 | Soybean | nucleus | 93.22 | 88.71 |
| CDY59084 | Canola | nucleus | 59.32 | 80.77 |
| KRH04931 | Soybean | nucleus | 75.14 | 74.72 |
| KRH16160 | Soybean | endoplasmic reticulum | 75.14 | 74.72 |
| CDY47646 | Canola | nucleus | 73.45 | 70.27 |
| VIT_01s0026g00250.t01 | Wine grape | nucleus | 78.53 | 70.2 |
| AT1G23860.1 | Thale cress | nucleus | 70.62 | 66.84 |
| Bra024624.1-P | Field mustard | nucleus | 73.45 | 60.47 |
| GSMUA_Achr1P09660_001 | Banana | nucleus | 75.71 | 60.36 |
| GSMUA_AchrUn_... | Banana | nucleus | 71.75 | 58.8 |
Protein Annotations
| EntrezGene:100776329 | MapMan:16.4.6.4 | Gene3D:3.30.70.330 | Gene3D:4.10.60.10 | EMBL:ACUP02011037 | EnsemblPlantsGene:GLYMA_18G136900 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | GO:GO:0008270 | InterPro:IPR000504 |
| InterPro:IPR001878 | InterPro:IPR012677 | UniProt:K7MRY5 | ProteinID:KRG99319.1 | EnsemblPlants:KRG99320 | ProteinID:KRG99320 |
| ProteinID:KRG99320.1 | ProteinID:KRG99321.1 | ProteinID:KRG99322.1 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFAM:PF00098 |
| PFscan:PS50102 | PFscan:PS50158 | PANTHER:PTHR23147 | PANTHER:PTHR23147:SF26 | InterPro:RBD_domain_sf | InterPro:RRM_dom |
| SMART:SM00343 | SMART:SM00360 | SUPFAM:SSF54928 | SUPFAM:SSF57756 | UniParc:UPI000233E861 | InterPro:Znf_CCHC |
| InterPro:Znf_CCHC_sf | SEG:seg | : | : | : | : |
Description
hypothetical protein
Coordinates
chr18:+:20108853..20112834
Molecular Weight (calculated)
20247.8 Da
IEP (calculated)
11.051
GRAVY (calculated)
-1.151
Length
177 amino acids
Sequence
(BLAST)
(BLAST)
001: MSRVYVGNLD PRVSERDLED EFRIYGVLMS VWVARRPPGY AFIEFDDRRD ALDAIQALDG KNGWRVELSH NSKGGGRGGR GRGGEDTKCY ECGEPGHFAR
101: ECRLRIGSRG LGSGRRRSPS PYRRRRSPSY GYDRRSYSPR GRRSPRRRSI SLPRGRSYSR SPPYRPSCHD SPYANAM
101: ECRLRIGSRG LGSGRRRSPS PYRRRRSPSY GYDRRSYSPR GRRSPRRRSI SLPRGRSYSR SPPYRPSCHD SPYANAM
001: MTRVYVGNLD PRVTERELED EFKAFGVLRN VWVARRPPGY AFLEFDDERD ALDAISALDR KNGWRVELSH KDKGGRGGGG GRRGGIEDSK CYECGELGHF
101: ARECRRGRGS VRRRSPSPRR RRSPDYGYAR RSISPRGRRS PPRRRSVTPP RRGRSYSRSP PYRGSRRDSP RRRDSPYGRR SPYANGV
101: ARECRRGRGS VRRRSPSPRR RRSPDYGYAR RSISPRGRRS PPRRRSVTPP RRGRSYSRSP PYRGSRRDSP RRRDSPYGRR SPYANGV
Arabidopsis Description
RSZ21SRZ21 [Source:UniProtKB/TrEMBL;Acc:A0A178WC08]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.