CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 21132161
endoplasmic reticulum: 27224218
nucleus: 27291164
endoplasmic reticulum: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27291164 doi

X Yin, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

msms PMID: 27224218 doi

X Wang, S Komatsu

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG93223
KRG95876
KRG95883
KRG99320
KRH01744
KRH02172
KRH13056
KRH15102
KRH28659
KRH38014
KRH42160
KRH42195
KRH45698
KRH46935
KRH50944
KRH58277
KRH58317
KRH67593
KRH67596
KRH69931
KRH73034
KRH76798

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G02840.1	KRG99320	AT1G23860.1	18674533
AT1G02840.1	KRH45698	AT1G23860.1	18674533
AT1G02840.1	KRG93223	AT1G53720.1	16497658
AT1G02840.1	KRH13056	AT1G53720.1	16497658
AT1G02840.1	KRG95876	AT2G37340.1	18674533
AT1G02840.1	KRG95883	AT2G37340.1	18674533
AT1G02840.1	KRH42195	AT2G37340.1	18674533
AT1G02840.1	KRH58317	AT2G37340.1	18674533
AT1G02840.1	KRH67593	AT2G37340.1	18674533
AT1G02840.1	KRH67596	AT2G37340.1	18674533
AT1G02840.1	KRH01744	AT2G43370.1	15987817
AT1G02840.1	KRH46935	AT2G43370.1	15987817
AT1G02840.1	KRH38014	AT3G13570.1	18674533
AT1G02840.1	KRH28659	AT3G50670.1	18674533
AT1G02840.1	KRH69931	AT3G50670.1	18674533
AT1G02840.1	KRH76798	AT3G50670.1	18674533
AT1G02840.1	KRH15102	AT3G55460.1	18674533
AT1G02840.1	KRH73034	AT3G55460.1	18674533
AT1G02840.1	KRH02172	AT5G18810.1	18674533
AT1G02840.1	KRH50944	AT5G18810.1	18674533
AT1G02840.1	KRH42160	AT5G64200.2	18674533
AT1G02840.1	KRH58277	AT5G64200.2	18674533

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG96443	Soybean	nucleus	85.28	81.47
Bra018550.1-P	Field mustard	nucleus	61.87	70.88
AT4G02430.4	Thale cress	nucleus	68.23	69.86
VIT_07s0005g00320.t01	Wine grape	nucleus	69.57	67.53
AT1G02840.1	Thale cress	nucleus	68.23	67.33
CDX97264	Canola	nucleus	67.89	66.56
CDX91319	Canola	nucleus	66.56	66.56
KRG92904	Soybean	nucleus	61.2	66.3
KXG32406	Sorghum	cytosol	57.19	66.02
CDY22050	Canola	nucleus	68.23	66.02
CDY50385	Canola	nucleus	67.89	65.91
Bra036267.1-P	Field mustard	nucleus	68.23	65.38
TraesCS3B01G293100.1	Wheat	cytosol	55.52	65.1
TraesCS3A01G260000.1	Wheat	cytosol	55.18	64.71
TraesCS3D01G260200.1	Wheat	cytosol	54.85	64.31
Solyc09g075090.1.1	Tomato	nucleus	65.55	64.26
Os03t0344100-02	Rice	mitochondrion, nucleus	61.2	63.99
EER94870	Sorghum	mitochondrion, nucleus	60.87	63.64
PGSC0003DMT400037966	Potato	cytosol, extracellular, nucleus	61.54	63.01
PGSC0003DMT400029666	Potato	nucleus	66.22	62.86
KRH53616	Soybean	nucleus	55.18	62.74
Zm00001d047498_P003	Maize	nucleus	59.53	62.46
TraesCS1A01G229900.1	Wheat	cytosol, mitochondrion, nucleus	52.84	62.45
TraesCS1D01G232100.2	Wheat	cytosol, mitochondrion, nucleus	52.84	62.2
KRH64312	Soybean	nucleus	55.52	62.17
TraesCS2A01G111600.2	Wheat	mitochondrion, nucleus	58.86	61.97
HORVU2Hr1G019410.4	Barley	mitochondrion, nucleus	59.2	61.89
Os07t0673500-01	Rice	nucleus	61.2	61.82
TraesCS2D01G112200.1	Wheat	nucleus	58.53	61.62
TraesCS4D01G168700.1	Wheat	mitochondrion, nucleus	59.87	61.09
TraesCS4B01G157000.1	Wheat	mitochondrion, nucleus	59.53	60.75
TraesCS1B01G244200.1	Wheat	cytosol, mitochondrion, nucleus	54.52	60.59
KXG21829	Sorghum	nucleus	56.19	60.43
HORVU4Hr1G046940.7	Barley	mitochondrion, nucleus	59.53	60.34
TraesCS4A01G157700.1	Wheat	mitochondrion	59.53	60.14
Zm00001d040672_P013	Maize	nucleus	57.53	58.7
Zm00001d041673_P001	Maize	cytosol	21.4	56.14
GSMUA_Achr8P10150_001	Banana	nucleus	65.22	55.71
Os05t0364600-01	Rice	nucleus	59.2	55.49
GSMUA_Achr11P...	Banana	nucleus	63.88	55.2
TraesCS2B01G130400.1	Wheat	nucleus	58.86	50.87
HORVU3Hr1G064550.7	Barley	nucleus, peroxisome	54.85	48.81
Zm00001d037925_P006	Maize	cytosol, nucleus, plastid	55.85	48.27
KRH75557	Soybean	cytosol	17.06	45.95
Solyc06g009060.2.1	Tomato	nucleus	37.12	42.37
Os01t0316600-01	Rice	plastid	14.38	34.68
KRG95876	Soybean	nucleus	27.42	28.57
KRH67593	Soybean	endoplasmic reticulum	27.09	28.22
KRH67596	Soybean	nucleus	26.42	26.42
Zm00001d009821_P001	Maize	plastid	27.76	26.1
KRG95883	Soybean	nucleus	25.42	25.59
KRH42195	Soybean	endoplasmic reticulum	20.4	22.18
KRH58317	Soybean	nucleus	11.37	15.53

Protein Annotations

EntrezGene:100789847	MapMan:16.4.6.1	Gene3D:3.30.70.330	UniProt:A0A0R0KMA6	EMBL:ACUP02002103	EnsemblPlantsGene:GLYMA_03G214400
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677
EnsemblPlants:KRH68188	ProteinID:KRH68188	ProteinID:KRH68188.1	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102
PANTHER:PTHR43933	PANTHER:PTHR43933:SF7	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928
UniParc:UPI00023C1C87	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr3:-:41918205..41923961

Molecular Weight (calculated)

33859.1 Da

IEP (calculated)

10.801

GRAVY (calculated)

-1.059

Length

299 amino acids

Sequence
(BLAST)

001: MSRRSSRTVY VGNLPGDIRE REVEDLFLKY GHITHIDLKV PPRPPGYAFV EFEDAQDAED AIRGRDGYDF DGHRLRVEPA HGGRGHSSSR DRYNSHSNGR
101: GGRGVSRRSE YRVLVSGLPS SASWQDLKDH MRKAGDVCFS QVFHDGRGTT GIVDYTNYDD MKYAIKKLDD SEFRNAFSKG YVRVREYDSR RDSSRSPSRG
201: PSHSRGRSYS RSRSRSRSYS RDRSQSKSPK GKSSQRSPAK SPSRSPSRSR SRSRSLSGYG NLQRTGNWKL GSWWDLVQLS ATHFVVEITV QVQVPIASA

Best Arabidopsis Sequence Match ( AT1G02840.1 )
(BLAST)

001: MSSRSSRTVY VGNLPGDIRE REVEDLFSKY GPVVQIDLKV PPRPPGYAFV EFDDARDAED AIHGRDGYDF DGHRLRVELA HGGRRSSDDT RGSFNGGGRG
101: GGRGRGDGGS RGPSRRSEFR VLVTGLPSSA SWQDLKDHMR KGGDVCFSQV YRDARGTTGV VDYTCYEDMK YALKKLDDTE FRNAFSNGYV RVREYDSRKD
201: SRSPSRGRSY SKSRSRSRGR SVSRSRSRSR SRSRSPKAKS SRRSPAKSTS RSPGPRSKSR SPSPRRSRSR SRSPLPSVQK EGSKSPSKPS PAKSPIHTRS
301: PSR

Arabidopsis Description

SR34Serine/arginine-rich-splicing factor SR34 [Source:UniProtKB/Swiss-Prot;Acc:O22315]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.