Factsheet for Os07t0673500-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
mitochondrion 3

Predictors

GFP

MS/MS

Papers

nucleus: 19621931

msms PMID: 19621931 doi

T Aki, S Yanagisawa

Department of Applied Biological Chemistry, The University of Tokyo, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0155600-01
Os01t0201000-01
Os02t0252100-02
Os03t0270200-01
Os03t0285900-01
Os03t0363800-01
Os03t0374575-01
Os03t0681900-01
Os05t0120100-01
Os05t0162600-01
Os06t0670400-00
Os06t0670500-01
Os07t0623300-01
Os07t0633200-02
Os08t0453800-00
Os09t0513700-01
Os10t0115600-02
Os11t0704700-01
Os12t0572400-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G02840.1	Os06t0670400-00	AT1G53720.1	16497658
AT1G02840.1	Os06t0670500-01	AT1G53720.1	16497658
AT1G02840.1	Os01t0155600-01	AT2G37340.1	18674533
AT1G02840.1	Os03t0285900-01	AT2G37340.1	18674533
AT1G02840.1	Os05t0120100-01	AT2G37340.1	18674533
AT1G02840.1	Os05t0162600-01	AT2G37340.1	18674533
AT1G02840.1	Os09t0513700-01	AT2G43370.1	15987817
AT1G02840.1	Os03t0374575-01	AT3G13570.1	18674533
AT1G02840.1	Os07t0633200-02	AT3G13570.1	18674533
AT1G02840.1	Os10t0115600-02	AT3G50670.1	18674533
AT1G02840.1	Os02t0252100-02	AT3G55460.1	18674533
AT1G02840.1	Os11t0704700-01	AT3G55460.1	18674533
AT1G02840.1	Os12t0572400-01	AT3G55460.1	18674533
AT1G02840.1	Os03t0363800-01	AT5G18810.1	18674533
AT1G02840.1	Os07t0623300-01	AT5G64200.2	18674533
AT1G02840.1	Os01t0201000-01	AT5G64960.1	18208522
AT1G02840.1	Os08t0453800-00	AT5G64960.1	18208522
AT1G09140.1	Os06t0670400-00	AT1G53720.1	16497658
AT1G09140.1	Os06t0670500-01	AT1G53720.1	16497658
AT1G09140.1	Os03t0270200-01	AT2G29210.1	21798944
AT1G09140.1	Os03t0374575-01	AT3G13570.1	18674533
AT1G09140.1	Os07t0633200-02	AT3G13570.1	18674533
AT1G09140.1	Os02t0252100-02	AT3G55460.1	18674533
AT1G09140.1	Os11t0704700-01	AT3G55460.1	18674533
AT1G09140.1	Os12t0572400-01	AT3G55460.1	18674533
AT1G09140.1	Os03t0681900-01	AT5G04280.1	21798944
AT1G09140.1	Os03t0363800-01	AT5G18810.1	18674533

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU2Hr1G019410.4	Barley	mitochondrion, nucleus	85.81	88.81
TraesCS2D01G112200.1	Wheat	nucleus	84.8	88.38
TraesCS2A01G111600.2	Wheat	mitochondrion, nucleus	84.12	87.68
Os03t0344100-02	Rice	mitochondrion, nucleus	83.45	86.36
TraesCS2B01G130400.1	Wheat	nucleus	84.8	72.54
Bra018581.1-P	Field mustard	cytosol	56.08	71.55
CDY66028	Canola	cytosol	59.12	69.17
VIT_14s0060g02290.t01	Wine grape	nucleus	66.22	68.06
Os05t0364600-01	Rice	nucleus	70.27	65.2
Solyc01g099810.2.1	Tomato	nucleus	58.11	65.15
PGSC0003DMT400029666	Potato	nucleus	69.26	65.08
CDX91319	Canola	nucleus	65.2	64.55
KRG92904	Soybean	nucleus	60.14	64.49
VIT_07s0005g00320.t01	Wine grape	nucleus	66.22	63.64
CDX97264	Canola	nucleus	65.54	63.61
Bra018550.1-P	Field mustard	nucleus	55.74	63.22
AT1G09140.1	Thale cress	cytosol	57.09	63.06
KRG96443	Soybean	nucleus	66.55	62.94
CDY50385	Canola	nucleus	65.2	62.66
CDY22050	Canola	nucleus	65.2	62.46
AT1G02840.1	Thale cress	nucleus	63.85	62.38
Solyc09g075090.1.1	Tomato	nucleus	64.19	62.3
Bra036267.1-P	Field mustard	nucleus	65.54	62.18
PGSC0003DMT400037966	Potato	cytosol, extracellular, nucleus	60.47	61.3
KRH68188	Soybean	nucleus	61.82	61.2
AT4G02430.4	Thale cress	nucleus	58.78	59.59
CDX95008	Canola	nucleus	54.73	51.1
Solyc06g009060.2.1	Tomato	nucleus	41.22	46.56
PGSC0003DMT400063701	Potato	nucleus	51.69	46.36
Os01t0316600-01	Rice	plastid	15.88	37.9
Os05t0120100-01	Rice	mitochondrion, nucleus	30.74	28.17
Os01t0155600-01	Rice	nucleus	30.07	27.47
Os03t0285900-01	Rice	nucleus	30.41	27.27
Os05t0162600-01	Rice	nucleus	22.64	19.82

Protein Annotations

MapMan:16.4.6.1	Gene3D:3.30.70.330	EntrezGene:4344256	ProteinID:BAF22522.1	ProteinID:BAT03174.1	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf
EnsemblPlantsGene:Os07g0673500	EnsemblPlants:Os07t0673500-01	PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR43933	PANTHER:PTHR43933:SF6
UniProt:Q0D3Q1	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI0000E12C72
RefSeq:XP_015647163.1	SEG:seg	:	:	:	:

Description

Similar to ASF/SF2-like pre-mRNA splicing factor SRP32''. (Os07t0673500-01);Similar to cDNA clone:001-208-C08, full insert sequence (Fragment). (Os07t0673500-02)

Coordinates

chr7:-:28469795..28474153

Molecular Weight (calculated)

33143.2 Da

IEP (calculated)

11.198

GRAVY (calculated)

-1.258

Length

296 amino acids

Sequence
(BLAST)

001: MSRRWSRTIY VGNLPGDIRE REVEDLFYKY GRIVDIDLKI PPRPPGFAFV EFEDPRDAED AIRGRDGYNF DGNRLRVELA HGGRGNSSSF NNSGGGGRRG
101: GVSRHTEYRV LVTGLPSSAS WQDLKDHMRN AGDVCYSEVY REGGGTIGIV DYTNYDDMKY AIRKLDDSEF KNAFSKAYIR VKEYDGKRSR SYSRSRSRSR
201: GRSYSRSRSP SKSPKGKSSR RSASRSRSRS ASSRSRSESK GRSPSRSPAR SQSPNTSPAN GDAASPKKRS PSRSPPKKRS PSRSPSRSRS PDAKSE

Best Arabidopsis Sequence Match ( AT1G09140.1 )
(BLAST)

001: MSSRWNRTIY VGNLPGDIRK CEVEDLFYKY GPIVDIDLKI PPRPPGYAFV EFEDPRDADD AIYGRDGYDF DGCRLRVEIA HGGRRFSPSV DRYSSSYSAS
101: RAPSRRSDYR VLVTGLPPSA SWQDLKDHMR KAGDVCFSEV FPDRKGMSGV VDYSNYDDMK YAIRKLDATE FRNAFSSAYI RVREYESRSV SRSPDDSKSY
201: RSRSRSRGPS CSYSSKSRSV SPARSISPRS RPLSRSRSLY SSVSRSQSRS KSRSRSRSNS PVSPVISG

Arabidopsis Description

SR30Serine/arginine-rich splicing factor SR30 [Source:UniProtKB/Swiss-Prot;Acc:Q9XFR5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.