Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 1
- mitochondrion 3
- cytosol 1
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EER94870 | Sorghum | mitochondrion, nucleus | 90.21 | 90.21 |
| Zm00001d047498_P003 | Maize | nucleus | 89.86 | 90.18 |
| TraesCS4D01G168700.1 | Wheat | mitochondrion, nucleus | 90.56 | 88.4 |
| TraesCS4B01G157000.1 | Wheat | mitochondrion, nucleus | 89.51 | 87.37 |
| TraesCS4A01G157700.1 | Wheat | mitochondrion | 89.51 | 86.49 |
| HORVU4Hr1G046940.7 | Barley | mitochondrion, nucleus | 87.76 | 85.08 |
| Os07t0673500-01 | Rice | nucleus | 86.36 | 83.45 |
| Bra018581.1-P | Field mustard | cytosol | 57.34 | 70.69 |
| CDY66028 | Canola | cytosol | 60.49 | 68.38 |
| VIT_14s0060g02290.t01 | Wine grape | nucleus | 67.13 | 66.67 |
| CDX91319 | Canola | nucleus | 68.88 | 65.89 |
| Solyc01g099810.2.1 | Tomato | nucleus | 59.44 | 64.39 |
| Os05t0364600-01 | Rice | nucleus | 71.68 | 64.26 |
| CDX97264 | Canola | nucleus | 68.53 | 64.26 |
| KRG92904 | Soybean | nucleus | 61.89 | 64.13 |
| PGSC0003DMT400029666 | Potato | nucleus | 70.63 | 64.13 |
| KRG96443 | Soybean | nucleus | 69.58 | 63.58 |
| Bra018550.1-P | Field mustard | nucleus | 57.69 | 63.22 |
| CDY22050 | Canola | nucleus | 68.18 | 63.11 |
| Bra036267.1-P | Field mustard | nucleus | 68.53 | 62.82 |
| AT1G09140.1 | Thale cress | cytosol | 58.74 | 62.69 |
| CDY50385 | Canola | nucleus | 67.48 | 62.66 |
| AT1G02840.1 | Thale cress | nucleus | 66.08 | 62.38 |
| VIT_07s0005g00320.t01 | Wine grape | nucleus | 66.08 | 61.36 |
| KRH68188 | Soybean | nucleus | 63.99 | 61.2 |
| Solyc09g075090.1.1 | Tomato | nucleus | 64.69 | 60.66 |
| PGSC0003DMT400037966 | Potato | cytosol, extracellular, nucleus | 61.89 | 60.62 |
| AT4G02430.4 | Thale cress | nucleus | 60.49 | 59.25 |
| CDX95008 | Canola | nucleus | 56.29 | 50.79 |
| PGSC0003DMT400063701 | Potato | nucleus | 54.55 | 47.27 |
| Solyc06g009060.2.1 | Tomato | nucleus | 42.31 | 46.18 |
| Os01t0316600-01 | Rice | plastid | 16.78 | 38.71 |
| Os05t0120100-01 | Rice | mitochondrion, nucleus | 32.87 | 29.1 |
| Os01t0155600-01 | Rice | nucleus | 32.17 | 28.4 |
| Os03t0285900-01 | Rice | nucleus | 32.52 | 28.18 |
| Os05t0162600-01 | Rice | nucleus | 25.17 | 21.3 |
Protein Annotations
| MapMan:16.4.6.1 | Gene3D:3.30.70.330 | EntrezGene:4332806 | ProteinID:ABF95884.1 | EMBL:AK061903 | ProteinID:BAS84143.1 |
| ProteinID:EEE59043.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | InterPro:IPR000504 |
| InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | EnsemblPlantsGene:Os03g0344100 | EnsemblPlants:Os03t0344100-02 | PFAM:PF00076 | PFscan:PS50102 |
| PANTHER:PTHR43933 | PANTHER:PTHR43933:SF6 | UniProt:Q10LL5 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 |
| SUPFAM:SSF54928 | UniParc:UPI0000DB423C | RefSeq:XP_015633039.1 | SEG:seg | : | : |
Description
Similar to ASF/SF2-like pre-mRNA splicing factor SRP32''. (Os03t0344100-01);Similar to Alternative splicing regulator. (Os03t0344100-02)
Coordinates
chr3:+:12814668..12819290
Molecular Weight (calculated)
31940.9 Da
IEP (calculated)
11.106
GRAVY (calculated)
-1.180
Length
286 amino acids
Sequence
(BLAST)
(BLAST)
001: MSRRWSRTIY VGNLPGDIRE REVEDLFYKY GRIVDIDLKI PPRPPGYAFV EFEDPRDAEE ACAGRDGYNF DGHRLRVEPA HGGRGNGGSS FDRPSNFGGG
101: GRRGVSRHSE YRVLVTGLPS SASWQDLKDH MRKAGDVCFS EVYREGGGTV GIVDYTNYDD MKYAIKKLDD SEFRNAFSKG HIRVKEYDGK RARSYSRSRS
201: PSRSRSKSRS LSKSPRTRRS ASRSRSRSRS VSSRSRSASK GRSPSRSPAR SKSPNASPAN GEASSPKKRS PSRSPSRSRS PDAKSE
101: GRRGVSRHSE YRVLVTGLPS SASWQDLKDH MRKAGDVCFS EVYREGGGTV GIVDYTNYDD MKYAIKKLDD SEFRNAFSKG HIRVKEYDGK RARSYSRSRS
201: PSRSRSKSRS LSKSPRTRRS ASRSRSRSRS VSSRSRSASK GRSPSRSPAR SKSPNASPAN GEASSPKKRS PSRSPSRSRS PDAKSE
001: MSGRFSRSIY VGNLPGDIRE HEIEDIFYKY GRIVDIELKV PPRPPCYCFV EFEHSRDAED AIKGRDGYNL DGCRLRVELA HGGRGQSSSD RRGGYGGGGS
101: GYGGGGGGGG SARFGVSRHS EFRVIVRGLP SSASWQDLKD HMRKAGDVCF AEVTRDSDGT YGVVDYTNYD DMKYAIRKLD DTEFRNPWAR GFIRVKKYES
201: SRSRSRSPSR SRSRSRSRSR SRGRGRSHSR SRSLSRSKSP RKDLSKSPRR SLSRSISKSR SPSPDKKKSP PRAMSRSKSR SRSRSRSPSK SPPKVREGSV
101: GYGGGGGGGG SARFGVSRHS EFRVIVRGLP SSASWQDLKD HMRKAGDVCF AEVTRDSDGT YGVVDYTNYD DMKYAIRKLD DTEFRNPWAR GFIRVKKYES
201: SRSRSRSPSR SRSRSRSRSR SRGRGRSHSR SRSLSRSKSP RKDLSKSPRR SLSRSISKSR SPSPDKKKSP PRAMSRSKSR SRSRSRSPSK SPPKVREGSV
Arabidopsis Description
SR34ASerine/arginine-rich splicing factor SR34A [Source:UniProtKB/Swiss-Prot;Acc:A2RVS6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.