Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX97264 | Canola | nucleus | 94.98 | 93.11 |
| CDY22050 | Canola | nucleus | 93.98 | 90.94 |
| Bra018550.1-P | Field mustard | nucleus | 78.93 | 90.42 |
| CDY50385 | Canola | nucleus | 92.98 | 90.26 |
| AT4G02430.4 | Thale cress | nucleus | 77.26 | 79.11 |
| KXG32406 | Sorghum | cytosol | 60.54 | 69.88 |
| TraesCS3D01G260200.1 | Wheat | cytosol | 59.53 | 69.8 |
| TraesCS3B01G293100.1 | Wheat | cytosol | 59.53 | 69.8 |
| TraesCS3A01G260000.1 | Wheat | cytosol | 59.2 | 69.41 |
| CDY66028 | Canola | cytosol | 58.53 | 69.17 |
| KRG96443 | Soybean | nucleus | 72.24 | 69.01 |
| Os03t0344100-02 | Rice | mitochondrion, nucleus | 65.89 | 68.88 |
| EER94870 | Sorghum | mitochondrion, nucleus | 65.89 | 68.88 |
| TraesCS1A01G229900.1 | Wheat | cytosol, mitochondrion, nucleus | 58.19 | 68.77 |
| TraesCS1D01G232100.2 | Wheat | cytosol, mitochondrion, nucleus | 58.19 | 68.5 |
| Zm00001d047498_P003 | Maize | nucleus | 65.22 | 68.42 |
| TraesCS2D01G112200.1 | Wheat | nucleus | 64.21 | 67.61 |
| TraesCS2A01G111600.2 | Wheat | mitochondrion, nucleus | 64.21 | 67.61 |
| HORVU2Hr1G019410.4 | Barley | mitochondrion, nucleus | 64.55 | 67.48 |
| KRH68188 | Soybean | nucleus | 66.56 | 66.56 |
| TraesCS4D01G168700.1 | Wheat | mitochondrion, nucleus | 64.21 | 65.53 |
| CDX94214 | Canola | cytosol | 43.81 | 65.5 |
| TraesCS1B01G244200.1 | Wheat | cytosol, mitochondrion, nucleus | 58.86 | 65.43 |
| Os07t0673500-01 | Rice | nucleus | 64.55 | 65.2 |
| TraesCS4B01G157000.1 | Wheat | mitochondrion, nucleus | 63.55 | 64.85 |
| KXG21829 | Sorghum | nucleus | 60.2 | 64.75 |
| CDX86974 | Canola | nucleus | 57.86 | 64.31 |
| HORVU4Hr1G046940.7 | Barley | mitochondrion, nucleus | 63.21 | 64.07 |
| CDY00202 | Canola | nucleus | 58.86 | 64.0 |
| TraesCS4A01G157700.1 | Wheat | mitochondrion | 63.21 | 63.85 |
| PGSC0003DMT400029666 | Potato | nucleus | 66.89 | 63.49 |
| Zm00001d040672_P013 | Maize | nucleus | 62.21 | 63.48 |
| VIT_07s0005g00320.t01 | Wine grape | nucleus | 64.21 | 62.34 |
| Os05t0364600-01 | Rice | nucleus | 64.88 | 60.81 |
| PGSC0003DMT400037966 | Potato | cytosol, extracellular, nucleus | 58.86 | 60.27 |
| CDX68538 | Canola | nucleus | 56.52 | 59.93 |
| GSMUA_Achr11P... | Banana | nucleus | 69.23 | 59.83 |
| CDY08133 | Canola | cytosol | 57.19 | 59.17 |
| CDY05936 | Canola | nucleus | 58.19 | 58.98 |
| Solyc09g075090.1.1 | Tomato | nucleus | 59.53 | 58.36 |
| GSMUA_Achr8P10150_001 | Banana | nucleus | 67.56 | 57.71 |
| Zm00001d041673_P001 | Maize | cytosol | 21.4 | 56.14 |
| TraesCS2B01G130400.1 | Wheat | nucleus | 64.21 | 55.49 |
| CDX95008 | Canola | nucleus | 55.85 | 52.68 |
| HORVU3Hr1G064550.7 | Barley | nucleus, peroxisome | 58.53 | 52.08 |
| Zm00001d037925_P006 | Maize | cytosol, nucleus, plastid | 56.19 | 48.55 |
| Solyc06g009060.2.1 | Tomato | nucleus | 41.14 | 46.95 |
| Os01t0316600-01 | Rice | plastid | 14.38 | 34.68 |
| CDX79732 | Canola | nucleus | 33.78 | 34.47 |
| CDY41599 | Canola | nucleus | 32.11 | 33.45 |
| CDX78183 | Canola | nucleus | 31.1 | 32.86 |
| CDX80835 | Canola | nucleus | 29.1 | 32.83 |
| CDX73550 | Canola | nucleus | 31.1 | 32.75 |
| CDY44717 | Canola | nucleus | 32.11 | 32.54 |
| CDY11223 | Canola | nucleus | 28.43 | 32.32 |
| CDY07586 | Canola | mitochondrion, nucleus | 31.1 | 32.29 |
| CDY46773 | Canola | nucleus | 34.11 | 32.28 |
| CDY52755 | Canola | mitochondrion, nucleus | 31.1 | 31.96 |
| CDY61855 | Canola | nucleus | 57.53 | 29.1 |
| Zm00001d009821_P001 | Maize | plastid | 27.76 | 26.1 |
| CDY45333 | Canola | nucleus, plastid, vacuole | 4.68 | 11.48 |
Protein Annotations
| EnsemblPlants:CDX91319 | EnsemblPlantsGene:GSBRNA2T00152586001 | Gene3D:3.30.70.330 | GO:A0A078DS20 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf | InterPro:RRM_dom |
| PANTHER:PTHR43933 | PANTHER:PTHR43933:SF7 | PFAM:PF00076 | PFscan:PS50102 | ProteinID:CDX91319 | ProteinID:CDX91319.1 |
| SEG:seg | SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI0004EDD3E2 | MapMan:16.4.6.1 | : |
Description
BnaC02g27300D
Coordinates
chrLK031866:-:1471772..1474388
Molecular Weight (calculated)
33727.2 Da
IEP (calculated)
11.549
GRAVY (calculated)
-1.266
Length
299 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSRSSRTIY VGNLPGDIRE REVEDLFSKY GPVVQIDLKI PPRPPGYAFV EFEDPRDADD AIHGRDGYDF DGHCLRVELA HGGRRSSNDA RSSYGRDGGD
101: RGRGPSRRSE FRVLVSGLPS SASWQDLKDH MRKGGEVCFS QVYRDGRGTT GIVDYTSYED MKYAIKKLDD TEFRNAFSRG YVRVREYDSR RDSKSPSRGR
201: SYSKSRSRSR SRGRSHSRSR SRSRSPKAKS SRRSPAKSTS RSPRSRSKSR SPPPRGSRSR STSPLPFVQK EASKSPSKLS PAKSPMRSRS KSRSRSPAR
101: RGRGPSRRSE FRVLVSGLPS SASWQDLKDH MRKGGEVCFS QVYRDGRGTT GIVDYTSYED MKYAIKKLDD TEFRNAFSRG YVRVREYDSR RDSKSPSRGR
201: SYSKSRSRSR SRGRSHSRSR SRSRSPKAKS SRRSPAKSTS RSPRSRSKSR SPPPRGSRSR STSPLPFVQK EASKSPSKLS PAKSPMRSRS KSRSRSPAR
001: MSSRSSRTVY VGNLPGDIRE REVEDLFSKY GPVVQIDLKV PPRPPGYAFV EFDDARDAED AIHGRDGYDF DGHRLRVELA HGGRRSSDDT RGSFNGGGRG
101: GGRGRGDGGS RGPSRRSEFR VLVTGLPSSA SWQDLKDHMR KGGDVCFSQV YRDARGTTGV VDYTCYEDMK YALKKLDDTE FRNAFSNGYV RVREYDSRKD
201: SRSPSRGRSY SKSRSRSRGR SVSRSRSRSR SRSRSPKAKS SRRSPAKSTS RSPGPRSKSR SPSPRRSRSR SRSPLPSVQK EGSKSPSKPS PAKSPIHTRS
301: PSR
101: GGRGRGDGGS RGPSRRSEFR VLVTGLPSSA SWQDLKDHMR KGGDVCFSQV YRDARGTTGV VDYTCYEDMK YALKKLDDTE FRNAFSNGYV RVREYDSRKD
201: SRSPSRGRSY SKSRSRSRGR SVSRSRSRSR SRSRSPKAKS SRRSPAKSTS RSPGPRSKSR SPSPRRSRSR SRSPLPSVQK EGSKSPSKPS PAKSPIHTRS
301: PSR
Arabidopsis Description
SR34Serine/arginine-rich-splicing factor SR34 [Source:UniProtKB/Swiss-Prot;Acc:O22315]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.