CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX78183	Canola	nucleus	98.24	98.59
CDY07586	Canola	mitochondrion, nucleus	95.77	94.44
Bra007004.1-P	Field mustard	nucleus	98.24	93.94
CDY52755	Canola	mitochondrion, nucleus	95.07	92.78
AT3G53500.2	Thale cress	mitochondrion, nucleus	90.49	90.49
CDX79732	Canola	nucleus	81.34	78.84
CDY46773	Canola	nucleus	81.34	73.1
KRH67593	Soybean	endoplasmic reticulum	69.01	68.29
KRG95876	Soybean	nucleus	68.66	67.94
KRH67596	Soybean	nucleus	66.9	63.55
CDX80835	Canola	nucleus	58.45	62.64
KRG95883	Soybean	nucleus	65.49	62.63
CDY41599	Canola	nucleus	63.03	62.37
CDY11223	Canola	nucleus	57.75	62.36
PGSC0003DMT400060435	Potato	nucleus	65.49	62.0
CDY44717	Canola	nucleus	63.73	61.36
EES00292	Sorghum	nucleus	59.51	57.09
KXG21152	Sorghum	nucleus	62.32	56.73
Solyc05g054920.2.1	Tomato	nucleus	66.2	55.79
GSMUA_Achr10P...	Banana	nucleus	63.38	55.38
VIT_08s0040g02860.t01	Wine grape	nucleus	51.76	55.26
PGSC0003DMT400061471	Potato	nucleus	60.56	54.6
Solyc09g005980.2.1	Tomato	nucleus	60.56	54.6
Os05t0120100-01	Rice	mitochondrion, nucleus	61.27	53.87
GSMUA_Achr6P15450_001	Banana	nucleus	62.68	52.82
Os03t0285900-01	Rice	nucleus	61.27	52.73
Zm00001d011004_P008	Maize	nucleus	62.68	52.66
TraesCS1A01G108000.2	Wheat	nucleus	51.41	52.52
Os01t0155600-01	Rice	nucleus	59.86	52.47
TraesCS1D01G111000.2	Wheat	nucleus	52.46	51.92
TraesCS1B01G065900.2	Wheat	nucleus	62.32	51.91
TraesCS1B01G130200.3	Wheat	nucleus	52.11	51.57
TraesCS1D01G051900.1	Wheat	nucleus	61.97	51.46
EES18924	Sorghum	nucleus	61.62	51.32
TraesCS1A01G049700.1	Wheat	nucleus	61.62	51.17
Zm00001d011005_P005	Maize	nucleus	63.38	50.99
KXG21387	Sorghum	nucleus	47.18	50.57
TraesCS3B01G151100.1	Wheat	nucleus	57.39	50.46
TraesCS3D01G134500.1	Wheat	nucleus	57.04	50.0
HORVU1Hr1G024060.21	Barley	nucleus	52.46	49.83
KRH42195	Soybean	endoplasmic reticulum	47.89	49.45
TraesCS3A01G308000.1	Wheat	nucleus	57.39	48.95
HORVU1Hr1G009950.7	Barley	nucleus, plastid	61.62	47.55
Zm00001d037543_P001	Maize	nucleus	29.58	46.67
Zm00001d035552_P001	Maize	endoplasmic reticulum, extracellular, golgi	59.51	45.55
OQU77498	Sorghum	nucleus	17.25	44.14
KRH58317	Soybean	nucleus	32.75	42.47
Os05t0162600-01	Rice	nucleus	45.07	37.87
CDY66028	Canola	cytosol	29.93	33.6
Zm00001d035551_P007	Maize	nucleus	45.07	32.65
CDX91319	Canola	nucleus	32.75	31.1
CDY50385	Canola	nucleus	33.1	30.52
CDX97264	Canola	nucleus	32.39	30.16
CDY22050	Canola	nucleus	32.75	30.1
CDY45333	Canola	nucleus, plastid, vacuole	12.68	29.51
CDX86974	Canola	nucleus	27.11	28.62
CDY00202	Canola	nucleus	27.46	28.36
KXG21391	Sorghum	nucleus	37.68	26.75
CDX68538	Canola	nucleus	26.41	26.6
CDX94214	Canola	cytosol	18.66	26.5
CDY08133	Canola	cytosol	26.06	25.61
CDY05936	Canola	nucleus	26.41	25.42
CDX95008	Canola	nucleus	27.82	24.92
CDY61855	Canola	nucleus	27.11	13.03

Protein Annotations

MapMan:16.4.6.5	Gene3D:3.30.70.330	Gene3D:4.10.60.10	GO:A0A078C9V1	EnsemblPlants:CDX73550	ProteinID:CDX73550
ProteinID:CDX73550.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	GO:GO:0008270	EnsemblPlantsGene:GSBRNA2T00109081001
InterPro:IPR000504	InterPro:IPR001878	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFAM:PF00098
PFscan:PS50102	PFscan:PS50158	PANTHER:PTHR23147	PANTHER:PTHR23147:SF21	InterPro:RBD_domain_sf	InterPro:RRM_dom
SMART:SM00343	SMART:SM00360	SUPFAM:SSF54928	SUPFAM:SSF57756	UniParc:UPI0004EDDF22	InterPro:Znf_CCHC
InterPro:Znf_CCHC_sf	SEG:seg	:	:	:	:

Description

BnaC08g24530D

Coordinates

chrLK031799:+:1116394..1118441

Molecular Weight (calculated)

31913.6 Da

IEP (calculated)

10.529

GRAVY (calculated)

-1.403

Length

284 amino acids

Sequence
(BLAST)

001: MPRFDDRYGN TRLYVGRLSS RTRSRDLERL FSRYGRVRDV DMKRDYAFVE FSDPRDADDA RYYLDGRDFD GSRITVEASR GAPRGSRDSG SRGPPPGSGR
101: CFNCGVDGHW ARDCTAGDWK NKCYRCGERG HIERNCKNSP SPKKARRGGS YSRSPVKSRS PRRRRSPSRS RSYSRGRSYS RSRSPVRRER SVEDRSLSPK
201: AMERSASPIG KDQSLSPDRR VVDASPKLEK QDGSDYEGSP RENGNGKSSV SPIAGGEESP AQDRSPIDDE PELNRSSPKG SESP

Best Arabidopsis Sequence Match ( AT3G53500.2 )
(BLAST)

001: MPRYDDRYGN TRLYVGRLSS RTRTRDLERL FSRYGRVRDV DMKRDYAFVE FSDPRDADDA RYYLDGRDFD GSRITVEASR GAPRGSRDNG SRGPPPGSGR
101: CFNCGVDGHW ARDCTAGDWK NKCYRCGERG HIERNCKNSP SPKKARQGGS YSRSPVKSRS PRRRRSPSRS RSYSRGRSYS RSRSPVRREK SVEDRSRSPK
201: AMERSVSPKG RDQSLSPDRK VIDASPKRGS DYDGSPKENG NGRNSASPIV GGGESPVGLN GQDRSPIDDE AELSRPSPKG SESP

Arabidopsis Description

RS2Z32RSZ32 [Source:UniProtKB/TrEMBL;Acc:A0A178V7M8]
SUBAcon: [mitochondrion,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.