Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
Predictors | GFP | MS/MS | Papers | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
TraesCS1A01G108000.2 | Wheat | nucleus | 86.29 | 92.81 |
TraesCS1D01G111000.2 | Wheat | nucleus | 88.63 | 92.33 |
TraesCS1B01G130200.3 | Wheat | nucleus | 87.96 | 91.64 |
KRH67593 | Soybean | endoplasmic reticulum | 54.18 | 56.45 |
KRG95876 | Soybean | nucleus | 54.18 | 56.45 |
CDX80835 | Canola | nucleus | 49.83 | 56.23 |
CDY11223 | Canola | nucleus | 48.83 | 55.51 |
PGSC0003DMT400060435 | Potato | nucleus | 54.85 | 54.67 |
KRH67596 | Soybean | nucleus | 54.52 | 54.52 |
KXG21387 | Sorghum | nucleus | 48.16 | 54.34 |
KRG95883 | Soybean | nucleus | 53.18 | 53.54 |
AT3G53500.2 | Thale cress | mitochondrion, nucleus | 50.5 | 53.17 |
OQU77498 | Sorghum | nucleus | 19.73 | 53.15 |
CDX78183 | Canola | nucleus | 50.17 | 53.0 |
GSMUA_Achr10P... | Banana | nucleus | 57.53 | 52.92 |
CDX79732 | Canola | nucleus | 51.84 | 52.9 |
CDX73550 | Canola | nucleus | 49.83 | 52.46 |
Bra005756.1-P | Field mustard | nucleus | 40.13 | 52.17 |
CDY07586 | Canola | mitochondrion, nucleus | 49.83 | 51.74 |
AT2G37340.1 | Thale cress | nucleus | 50.17 | 51.72 |
GSMUA_Achr6P15450_001 | Banana | nucleus | 58.19 | 51.63 |
CDY52755 | Canola | mitochondrion, nucleus | 49.83 | 51.2 |
Bra003139.1-P | Field mustard | mitochondrion, nucleus | 49.83 | 51.2 |
VIT_08s0040g02860.t01 | Wine grape | nucleus | 45.15 | 50.75 |
Bra007004.1-P | Field mustard | nucleus | 50.17 | 50.51 |
Solyc09g005980.2.1 | Tomato | nucleus | 52.84 | 50.16 |
PGSC0003DMT400061471 | Potato | nucleus | 52.51 | 49.84 |
Bra023114.1-P | Field mustard | nucleus | 52.51 | 49.68 |
CDY46773 | Canola | nucleus | 52.17 | 49.37 |
Zm00001d037543_P001 | Maize | nucleus | 29.43 | 48.89 |
Solyc05g054920.2.1 | Tomato | nucleus | 54.52 | 48.37 |
HORVU1Hr1G009950.7 | Barley | nucleus, plastid | 57.19 | 46.47 |
KRH42195 | Soybean | endoplasmic reticulum | 37.12 | 40.36 |
Os05t0162600-01 | Rice | nucleus | 43.48 | 38.46 |
KRH58317 | Soybean | nucleus | 27.42 | 37.44 |
KXG21391 | Sorghum | nucleus | 37.79 | 28.25 |
HORVU4Hr1G046940.7 | Barley | mitochondrion, nucleus | 25.75 | 26.1 |
HORVU2Hr1G019410.4 | Barley | mitochondrion, nucleus | 24.08 | 25.17 |
HORVU3Hr1G064550.7 | Barley | nucleus, peroxisome | 24.75 | 22.02 |
Protein Annotations
MapMan:16.4.6.5 | Gene3D:3.30.70.330 | Gene3D:4.10.60.10 | UniProt:A0A287EXN6 | EMBL:AK372204 | ncoils:Coil |
GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | GO:GO:0008270 | EnsemblPlantsGene:HORVU1Hr1G024060 |
EnsemblPlants:HORVU1Hr1G024060.21 | InterPro:IPR000504 | InterPro:IPR001878 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 |
PFAM:PF00098 | PFscan:PS50102 | PFscan:PS50158 | PANTHER:PTHR23147 | PANTHER:PTHR23147:SF25 | InterPro:RBD_domain_sf |
InterPro:RRM_dom | SMART:SM00343 | SMART:SM00360 | SUPFAM:SSF54928 | SUPFAM:SSF57756 | UniParc:UPI000B478BB0 |
InterPro:Znf_CCHC | InterPro:Znf_CCHC_sf | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chrchr1H:+:107290987..107293947
Molecular Weight (calculated)
34503.5 Da
IEP (calculated)
9.670
GRAVY (calculated)
-1.396
Length
299 amino acids
Sequence
(BLAST)
(BLAST)
001: MPRYDDRYDR YDDRYDRYDD RYDRYNDRYD RYDQYGGNTK LYVGHLSTHT RTKDVEYLFG RYGRIRCVEL KHDYGFVEFS NPRDADDARY ELDGQDVDGS
101: RIIVEFARGT PRGPGGSREY LGRGPPPGSG RCFNCGIDGH WARDCNAGDW KNKCYRCGEK GHIEKNCQNS PKNLKRGRSY SRSPPPYRGM SRSRSYSRSH
201: RIINRRCCDF LINSRSPYTR RDDCAVGHEE RRPRSSSYSP RRSASPSGLN RSPAPNGKSH PPREQAEVNG LHNGVRGNSL SPARDSRPAT NGRSPSAWE
101: RIIVEFARGT PRGPGGSREY LGRGPPPGSG RCFNCGIDGH WARDCNAGDW KNKCYRCGEK GHIEKNCQNS PKNLKRGRSY SRSPPPYRGM SRSRSYSRSH
201: RIINRRCCDF LINSRSPYTR RDDCAVGHEE RRPRSSSYSP RRSASPSGLN RSPAPNGKSH PPREQAEVNG LHNGVRGNSL SPARDSRPAT NGRSPSAWE
001: MPRYDDRYGN TRLYVGRLSS RTRTRDLERL FSRYGRVRDV DMKRDYAFVE FGDPRDADDA RHYLDGRDFD GSRITVEFSR GAPRGSRDFD SRGPPPGAGR
101: CFNCGVDGHW ARDCTAGDWK NKCYRCGERG HIERNCKNSP KKLRRSGSYS RSPVRSRSPR RRRSPSRSLS RSRSYSRSRS PVRRRERSVE ERSRSPKRMD
201: DSLSPRARDR SPVLDDEGSP KIIDGSPPPS PKLQKEVGSD RDGGSPQDNG RNSVVSPVVG AGGDSSKEDR SPVDDDYEPN RTSPRGSESP
101: CFNCGVDGHW ARDCTAGDWK NKCYRCGERG HIERNCKNSP KKLRRSGSYS RSPVRSRSPR RRRSPSRSLS RSRSYSRSRS PVRRRERSVE ERSRSPKRMD
201: DSLSPRARDR SPVLDDEGSP KIIDGSPPPS PKLQKEVGSD RDGGSPQDNG RNSVVSPVVG AGGDSSKEDR SPVDDDYEPN RTSPRGSESP
Arabidopsis Description
RS2Z33Serine/arginine-rich splicing factor RS2Z33 [Source:UniProtKB/Swiss-Prot;Acc:Q8VYA5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.