Skip to main content
crop-pal logo
Barley
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 3
PPI

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT2G37340.1 HORVU2Hr1G019410.4 AT1G02840.1 18674533
AT2G37340.1 HORVU3Hr1G064550.7 AT1G02840.1 18674533
AT2G37340.1 HORVU4Hr1G046940.7 AT1G02840.1 18674533
AT2G37340.1 HORVU1Hr1G015670.5 AT1G53720.1 16497658
AT2G37340.1 HORVU1Hr1G040970.1 AT1G53720.1 16497658
AT2G37340.1 HORVU6Hr1G042040.1 AT1G53720.1 16497658
AT2G37340.1 HORVU7Hr1G107520.5 AT1G53720.1 16497658
AT2G37340.1 HORVU5Hr1G078170.27 AT2G43370.1 15987817
AT2G37340.1 HORVU2Hr1G028210.9 AT3G13570.1 18674533
AT2G37340.1 HORVU1Hr1G030660.5 AT3G50670.1 18674533
AT2G37340.1 HORVU1Hr1G046870.5 AT3G50670.1 18674533
AT2G37340.1 HORVU2Hr1G073490.2 AT3G55460.1 18674533
AT2G37340.1 HORVU4Hr1G003820.8 AT3G55460.1 18674533
AT2G37340.1 HORVU4Hr1G027820.11 AT3G55460.1 18674533
AT2G37340.1 HORVU4Hr1G058060.2 AT3G55460.1 18674533
AT2G37340.1 HORVU5Hr1G021180.4 AT3G55460.1 18674533
AT2G37340.1 HORVU6Hr1G034010.3 AT3G55460.1 18674533
AT2G37340.1 HORVU6Hr1G061320.1 AT3G55460.1 18674533
AT2G37340.1 HORVU7Hr1G118660.4 AT3G55460.1 18674533
AT2G37340.1 HORVU2Hr1G073490.2 AT3G55460.1 21798944
AT2G37340.1 HORVU4Hr1G003820.8 AT3G55460.1 21798944
AT2G37340.1 HORVU4Hr1G027820.11 AT3G55460.1 21798944
AT2G37340.1 HORVU4Hr1G058060.2 AT3G55460.1 21798944
AT2G37340.1 HORVU5Hr1G021180.4 AT3G55460.1 21798944
AT2G37340.1 HORVU6Hr1G034010.3 AT3G55460.1 21798944
AT2G37340.1 HORVU6Hr1G061320.1 AT3G55460.1 21798944
AT2G37340.1 HORVU7Hr1G118660.4 AT3G55460.1 21798944
AT2G37340.1 HORVU6Hr1G083840.4 AT4G31580.1 18674533
AT2G37340.1 HORVU7Hr1G031320.1 AT4G31580.1 18674533
AT2G37340.1 HORVU1Hr1G043200.4 AT5G18810.1 18674533
AT2G37340.1 HORVU4Hr1G045510.3 AT5G18810.1 18674533
AT2G37340.1 HORVU7Hr1G080760.3 AT5G18810.1 18674533
AT2G37340.1 HORVU2Hr1G029630.1 AT5G64200.2 18674533
AT2G37340.1 HORVU2Hr1G029640.1 AT5G64200.2 18674533
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS1A01G108000.2 Wheat nucleus 86.29 92.81
TraesCS1D01G111000.2 Wheat nucleus 88.63 92.33
TraesCS1B01G130200.3 Wheat nucleus 87.96 91.64
KRH67593 Soybean endoplasmic reticulum 54.18 56.45
KRG95876 Soybean nucleus 54.18 56.45
CDX80835 Canola nucleus 49.83 56.23
CDY11223 Canola nucleus 48.83 55.51
PGSC0003DMT400060435 Potato nucleus 54.85 54.67
KRH67596 Soybean nucleus 54.52 54.52
KXG21387 Sorghum nucleus 48.16 54.34
KRG95883 Soybean nucleus 53.18 53.54
AT3G53500.2 Thale cress mitochondrion, nucleus 50.5 53.17
OQU77498 Sorghum nucleus 19.73 53.15
CDX78183 Canola nucleus 50.17 53.0
GSMUA_Achr10P... Banana nucleus 57.53 52.92
CDX79732 Canola nucleus 51.84 52.9
CDX73550 Canola nucleus 49.83 52.46
Bra005756.1-P Field mustard nucleus 40.13 52.17
CDY07586 Canola mitochondrion, nucleus 49.83 51.74
AT2G37340.1 Thale cress nucleus 50.17 51.72
GSMUA_Achr6P15450_001 Banana nucleus 58.19 51.63
CDY52755 Canola mitochondrion, nucleus 49.83 51.2
Bra003139.1-P Field mustard mitochondrion, nucleus 49.83 51.2
VIT_08s0040g02860.t01 Wine grape nucleus 45.15 50.75
Bra007004.1-P Field mustard nucleus 50.17 50.51
Solyc09g005980.2.1 Tomato nucleus 52.84 50.16
PGSC0003DMT400061471 Potato nucleus 52.51 49.84
Bra023114.1-P Field mustard nucleus 52.51 49.68
CDY46773 Canola nucleus 52.17 49.37
Zm00001d037543_P001 Maize nucleus 29.43 48.89
Solyc05g054920.2.1 Tomato nucleus 54.52 48.37
HORVU1Hr1G009950.7 Barley nucleus, plastid 57.19 46.47
KRH42195 Soybean endoplasmic reticulum 37.12 40.36
Os05t0162600-01 Rice nucleus 43.48 38.46
KRH58317 Soybean nucleus 27.42 37.44
KXG21391 Sorghum nucleus 37.79 28.25
HORVU4Hr1G046940.7 Barley mitochondrion, nucleus 25.75 26.1
HORVU2Hr1G019410.4 Barley mitochondrion, nucleus 24.08 25.17
HORVU3Hr1G064550.7 Barley nucleus, peroxisome 24.75 22.02
Protein Annotations
MapMan:16.4.6.5Gene3D:3.30.70.330Gene3D:4.10.60.10UniProt:A0A287EXN6EMBL:AK372204ncoils:Coil
GO:GO:0003674GO:GO:0003676GO:GO:0003723GO:GO:0005488GO:GO:0008270EnsemblPlantsGene:HORVU1Hr1G024060
EnsemblPlants:HORVU1Hr1G024060.21InterPro:IPR000504InterPro:IPR001878InterPro:IPR012677InterPro:Nucleotide-bd_a/b_plait_sfPFAM:PF00076
PFAM:PF00098PFscan:PS50102PFscan:PS50158PANTHER:PTHR23147PANTHER:PTHR23147:SF25InterPro:RBD_domain_sf
InterPro:RRM_domSMART:SM00343SMART:SM00360SUPFAM:SSF54928SUPFAM:SSF57756UniParc:UPI000B478BB0
InterPro:Znf_CCHCInterPro:Znf_CCHC_sfSEG:seg:::
Description
No Description!
Coordinates
chrchr1H:+:107290987..107293947
Molecular Weight (calculated)
34503.5 Da
IEP (calculated)
9.670
GRAVY (calculated)
-1.396
Length
299 amino acids
Sequence
(BLAST)
001: MPRYDDRYDR YDDRYDRYDD RYDRYNDRYD RYDQYGGNTK LYVGHLSTHT RTKDVEYLFG RYGRIRCVEL KHDYGFVEFS NPRDADDARY ELDGQDVDGS
101: RIIVEFARGT PRGPGGSREY LGRGPPPGSG RCFNCGIDGH WARDCNAGDW KNKCYRCGEK GHIEKNCQNS PKNLKRGRSY SRSPPPYRGM SRSRSYSRSH
201: RIINRRCCDF LINSRSPYTR RDDCAVGHEE RRPRSSSYSP RRSASPSGLN RSPAPNGKSH PPREQAEVNG LHNGVRGNSL SPARDSRPAT NGRSPSAWE
Best Arabidopsis Sequence Match ( AT2G37340.1 )
(BLAST)
001: MPRYDDRYGN TRLYVGRLSS RTRTRDLERL FSRYGRVRDV DMKRDYAFVE FGDPRDADDA RHYLDGRDFD GSRITVEFSR GAPRGSRDFD SRGPPPGAGR
101: CFNCGVDGHW ARDCTAGDWK NKCYRCGERG HIERNCKNSP KKLRRSGSYS RSPVRSRSPR RRRSPSRSLS RSRSYSRSRS PVRRRERSVE ERSRSPKRMD
201: DSLSPRARDR SPVLDDEGSP KIIDGSPPPS PKLQKEVGSD RDGGSPQDNG RNSVVSPVVG AGGDSSKEDR SPVDDDYEPN RTSPRGSESP
Arabidopsis Description
RS2Z33Serine/arginine-rich splicing factor RS2Z33 [Source:UniProtKB/Swiss-Prot;Acc:Q8VYA5]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.