Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 3
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY52755 | Canola | mitochondrion, nucleus | 98.61 | 97.59 |
| CDX73550 | Canola | nucleus | 94.44 | 95.77 |
| CDX78183 | Canola | nucleus | 94.1 | 95.76 |
| AT3G53500.2 | Thale cress | mitochondrion, nucleus | 89.93 | 91.2 |
| CDX79732 | Canola | nucleus | 80.9 | 79.52 |
| CDY46773 | Canola | nucleus | 80.9 | 73.73 |
| KRH67593 | Soybean | endoplasmic reticulum | 66.67 | 66.9 |
| KRG95876 | Soybean | nucleus | 66.32 | 66.55 |
| CDX80835 | Canola | nucleus | 57.29 | 62.26 |
| CDY11223 | Canola | nucleus | 56.6 | 61.98 |
| KRH67596 | Soybean | nucleus | 64.24 | 61.87 |
| CDY41599 | Canola | nucleus | 61.46 | 61.67 |
| KRG95883 | Soybean | nucleus | 63.19 | 61.28 |
| CDY44717 | Canola | nucleus | 62.15 | 60.68 |
| PGSC0003DMT400060435 | Potato | nucleus | 63.19 | 60.67 |
| EES00292 | Sorghum | nucleus | 58.68 | 57.09 |
| KXG21152 | Sorghum | nucleus | 60.42 | 55.77 |
| VIT_08s0040g02860.t01 | Wine grape | nucleus | 51.39 | 55.64 |
| GSMUA_Achr10P... | Banana | nucleus | 61.81 | 54.77 |
| Solyc05g054920.2.1 | Tomato | nucleus | 63.54 | 54.3 |
| PGSC0003DMT400061471 | Potato | nucleus | 59.38 | 54.29 |
| Solyc09g005980.2.1 | Tomato | nucleus | 59.38 | 54.29 |
| Os05t0120100-01 | Rice | mitochondrion, nucleus | 59.38 | 52.94 |
| TraesCS1A01G108000.2 | Wheat | nucleus | 50.69 | 52.52 |
| Os01t0155600-01 | Rice | nucleus | 59.03 | 52.47 |
| Os03t0285900-01 | Rice | nucleus | 59.72 | 52.12 |
| GSMUA_Achr6P15450_001 | Banana | nucleus | 60.76 | 51.93 |
| TraesCS1D01G111000.2 | Wheat | nucleus | 51.74 | 51.92 |
| Zm00001d011004_P008 | Maize | nucleus | 60.76 | 51.78 |
| TraesCS1B01G130200.3 | Wheat | nucleus | 51.39 | 51.57 |
| KXG21387 | Sorghum | nucleus | 47.22 | 51.32 |
| TraesCS1B01G065900.2 | Wheat | nucleus | 60.42 | 51.03 |
| TraesCS1D01G051900.1 | Wheat | nucleus | 60.42 | 50.88 |
| TraesCS1A01G049700.1 | Wheat | nucleus | 60.07 | 50.58 |
| TraesCS3B01G151100.1 | Wheat | nucleus | 56.6 | 50.46 |
| EES18924 | Sorghum | nucleus | 59.38 | 50.15 |
| TraesCS3D01G134500.1 | Wheat | nucleus | 56.25 | 50.0 |
| Zm00001d011005_P005 | Maize | nucleus | 61.11 | 49.86 |
| HORVU1Hr1G024060.21 | Barley | nucleus | 51.74 | 49.83 |
| TraesCS3A01G308000.1 | Wheat | nucleus | 56.6 | 48.95 |
| KRH42195 | Soybean | endoplasmic reticulum | 45.83 | 48.0 |
| Zm00001d037543_P001 | Maize | nucleus | 29.51 | 47.22 |
| HORVU1Hr1G009950.7 | Barley | nucleus, plastid | 60.07 | 47.01 |
| Zm00001d035552_P001 | Maize | endoplasmic reticulum, extracellular, golgi | 57.64 | 44.74 |
| OQU77498 | Sorghum | nucleus | 16.67 | 43.24 |
| KRH58317 | Soybean | nucleus | 31.25 | 41.1 |
| Os05t0162600-01 | Rice | nucleus | 44.44 | 37.87 |
| CDY66028 | Canola | cytosol | 28.82 | 32.81 |
| Zm00001d035551_P007 | Maize | nucleus | 43.4 | 31.89 |
| CDX91319 | Canola | nucleus | 32.29 | 31.1 |
| CDY50385 | Canola | nucleus | 32.64 | 30.52 |
| CDX97264 | Canola | nucleus | 31.94 | 30.16 |
| CDY22050 | Canola | nucleus | 32.29 | 30.1 |
| CDY45333 | Canola | nucleus, plastid, vacuole | 12.15 | 28.69 |
| CDX86974 | Canola | nucleus | 26.39 | 28.25 |
| CDY00202 | Canola | nucleus | 26.74 | 28.0 |
| CDX68538 | Canola | nucleus | 26.39 | 26.95 |
| KXG21391 | Sorghum | nucleus | 36.81 | 26.5 |
| CDX94214 | Canola | cytosol | 18.06 | 26.0 |
| CDY08133 | Canola | cytosol | 25.35 | 25.26 |
| CDY05936 | Canola | nucleus | 25.69 | 25.08 |
| CDX95008 | Canola | nucleus | 26.74 | 24.29 |
| CDY61855 | Canola | nucleus | 27.08 | 13.2 |
Protein Annotations
| MapMan:16.4.6.5 | Gene3D:3.30.70.330 | Gene3D:4.10.60.10 | GO:A0A078F2K0 | UniProt:A0A078F2K0 | EnsemblPlants:CDY07586 |
| ProteinID:CDY07586 | ProteinID:CDY07586.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 |
| GO:GO:0008270 | EnsemblPlantsGene:GSBRNA2T00124672001 | InterPro:IPR000504 | InterPro:IPR001878 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf |
| PFAM:PF00076 | PFAM:PF00098 | PFscan:PS50102 | PFscan:PS50158 | PANTHER:PTHR23147 | PANTHER:PTHR23147:SF21 |
| InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00343 | SMART:SM00360 | SUPFAM:SSF54928 | SUPFAM:SSF57756 |
| UniParc:UPI0004EEA37B | InterPro:Znf_CCHC | InterPro:Znf_CCHC_sf | SEG:seg | : | : |
Description
BnaC06g14780DBnaC06g14780D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F2K0]
Coordinates
chrLK031979:+:902094..904594
Molecular Weight (calculated)
32390.2 Da
IEP (calculated)
10.632
GRAVY (calculated)
-1.439
Length
288 amino acids
Sequence
(BLAST)
(BLAST)
001: MPRFDDRYGN TRLYVGRLSS RTRTRDLERL FSRYGRVRDV DMKRDYAFVE FSDPRDADDA RHYLDGRDFD GSRITVEASR GAPRGSRDSR DNGSRGPPPG
101: SGRCFNCGVD GHWARDCTAG DWKNKCYRCG ERGHIERNCK NSPSPKKARG GGSYSRSPVK SRSPRRRRSP SRSRSYSRGR SYSRSRSPVR RERSVEDRSL
201: SPKAMERSVS PRGKDQSMSP ERRVVDASPK REKQEGSDYE GSPKENGNGK SSVSPIVGGE ESPAGLDRSP IDDEPELNRS SPKGSESP
101: SGRCFNCGVD GHWARDCTAG DWKNKCYRCG ERGHIERNCK NSPSPKKARG GGSYSRSPVK SRSPRRRRSP SRSRSYSRGR SYSRSRSPVR RERSVEDRSL
201: SPKAMERSVS PRGKDQSMSP ERRVVDASPK REKQEGSDYE GSPKENGNGK SSVSPIVGGE ESPAGLDRSP IDDEPELNRS SPKGSESP
001: MPRYDDRYGN TRLYVGRLSS RTRTRDLERL FSRYGRVRDV DMKRDYAFVE FSDPRDADDA RYYLDGRDFD GSRITVEASR GAPRGSRDNG SRGPPPGSGR
101: CFNCGVDGHW ARDCTAGDWK NKCYRCGERG HIERNCKNSP SPKKARQGGS YSRSPVKSRS PRRRRSPSRS RSYSRGRSYS RSRSPVRREK SVEDRSRSPK
201: AMERSVSPKG RDQSLSPDRK VIDASPKRGS DYDGSPKENG NGRNSASPIV GGGESPVGLN GQDRSPIDDE AELSRPSPKG SESP
101: CFNCGVDGHW ARDCTAGDWK NKCYRCGERG HIERNCKNSP SPKKARQGGS YSRSPVKSRS PRRRRSPSRS RSYSRGRSYS RSRSPVRREK SVEDRSRSPK
201: AMERSVSPKG RDQSLSPDRK VIDASPKRGS DYDGSPKENG NGRNSASPIV GGGESPVGLN GQDRSPIDDE AELSRPSPKG SESP
Arabidopsis Description
RS2Z32RSZ32 [Source:UniProtKB/TrEMBL;Acc:A0A178V7M8]
SUBAcon: [mitochondrion,nucleus]
SUBAcon: [mitochondrion,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.