CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus

Predictor Summary:

nucleus 3
cytosol 2
plastid 1
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra003139.1-P	Field mustard	mitochondrion, nucleus	100.0	100.0
CDY07586	Canola	mitochondrion, nucleus	97.59	98.61
CDX73550	Canola	nucleus	92.78	95.07
CDX78183	Canola	nucleus	92.44	95.05
AT3G53500.2	Thale cress	mitochondrion, nucleus	89.35	91.55
CDX79732	Canola	nucleus	80.07	79.52
CDY46773	Canola	nucleus	80.07	73.73
KRH67593	Soybean	endoplasmic reticulum	65.98	66.9
KRG95876	Soybean	nucleus	65.64	66.55
CDX80835	Canola	nucleus	56.7	62.26
CDY11223	Canola	nucleus	56.01	61.98
KRH67596	Soybean	nucleus	63.57	61.87
CDY41599	Canola	nucleus	60.82	61.67
KRG95883	Soybean	nucleus	62.54	61.28
CDY44717	Canola	nucleus	61.51	60.68
PGSC0003DMT400060435	Potato	nucleus	62.54	60.67
EES00292	Sorghum	nucleus	58.08	57.09
KXG21152	Sorghum	nucleus	59.79	55.77
VIT_08s0040g02860.t01	Wine grape	nucleus	50.86	55.64
GSMUA_Achr10P...	Banana	nucleus	61.17	54.77
Solyc05g054920.2.1	Tomato	nucleus	62.89	54.3
PGSC0003DMT400061471	Potato	nucleus	58.76	54.29
Solyc09g005980.2.1	Tomato	nucleus	58.76	54.29
Os05t0120100-01	Rice	mitochondrion, nucleus	58.76	52.94
TraesCS1A01G108000.2	Wheat	nucleus	50.17	52.52
Os01t0155600-01	Rice	nucleus	58.42	52.47
Os03t0285900-01	Rice	nucleus	59.11	52.12
GSMUA_Achr6P15450_001	Banana	nucleus	60.14	51.93
TraesCS1D01G111000.2	Wheat	nucleus	51.2	51.92
Zm00001d011004_P008	Maize	nucleus	60.14	51.78
TraesCS1B01G130200.3	Wheat	nucleus	50.86	51.57
KXG21387	Sorghum	nucleus	46.74	51.32
TraesCS1B01G065900.2	Wheat	nucleus	59.79	51.03
TraesCS1D01G051900.1	Wheat	nucleus	59.79	50.88
TraesCS1A01G049700.1	Wheat	nucleus	59.45	50.58
TraesCS3B01G151100.1	Wheat	nucleus	56.01	50.46
EES18924	Sorghum	nucleus	58.76	50.15
TraesCS3D01G134500.1	Wheat	nucleus	55.67	50.0
Zm00001d011005_P005	Maize	nucleus	60.48	49.86
HORVU1Hr1G024060.21	Barley	nucleus	51.2	49.83
TraesCS3A01G308000.1	Wheat	nucleus	56.01	48.95
KRH42195	Soybean	endoplasmic reticulum	45.02	47.64
Zm00001d037543_P001	Maize	nucleus	29.21	47.22
HORVU1Hr1G009950.7	Barley	nucleus, plastid	59.45	47.01
Zm00001d035552_P001	Maize	endoplasmic reticulum, extracellular, golgi	57.04	44.74
OQU77498	Sorghum	nucleus	16.49	43.24
KRH58317	Soybean	nucleus	30.93	41.1
Os05t0162600-01	Rice	nucleus	43.99	37.87
CDY66028	Canola	cytosol	28.52	32.81
Zm00001d035551_P007	Maize	nucleus	42.96	31.89
CDX91319	Canola	nucleus	31.96	31.1
CDY50385	Canola	nucleus	32.3	30.52
CDX97264	Canola	nucleus	31.62	30.16
CDY22050	Canola	nucleus	31.96	30.1
CDY45333	Canola	nucleus, plastid, vacuole	12.03	28.69
CDX86974	Canola	nucleus	26.12	28.25
CDY00202	Canola	nucleus	26.46	28.0
CDX68538	Canola	nucleus	26.12	26.95
KXG21391	Sorghum	nucleus	36.43	26.5
CDX94214	Canola	cytosol	17.87	26.0
CDY08133	Canola	cytosol	25.09	25.26
CDY05936	Canola	nucleus	25.43	25.08
CDX95008	Canola	nucleus	26.46	24.29
CDY61855	Canola	nucleus	26.8	13.2

Protein Annotations

MapMan:16.4.6.5	Gene3D:3.30.70.330	Gene3D:4.10.60.10	GO:A0A078INW5	UniProt:A0A078INW5	EnsemblPlants:CDY52755
ProteinID:CDY52755	ProteinID:CDY52755.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488
GO:GO:0008270	EnsemblPlantsGene:GSBRNA2T00007699001	InterPro:IPR000504	InterPro:IPR001878	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf
PFAM:PF00076	PFAM:PF00098	PFscan:PS50102	PFscan:PS50158	PANTHER:PTHR23147	PANTHER:PTHR23147:SF21
InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00343	SMART:SM00360	SUPFAM:SSF54928	SUPFAM:SSF57756
UniParc:UPI00025413B3	InterPro:Znf_CCHC	InterPro:Znf_CCHC_sf	SEG:seg	:	:

Description

BnaA07g37700DBnaA07g37700D protein [Source:UniProtKB/TrEMBL;Acc:A0A078INW5]

Coordinates

chrLK033124:+:42880..45146

Molecular Weight (calculated)

32618.4 Da

IEP (calculated)

10.632

GRAVY (calculated)

-1.403

Length

291 amino acids

Sequence
(BLAST)

001: MPRFDDRYGN TRLYVGRLSS RTRTRDLERL FSRYGRVRDV DMKRDYAFVE FSDPRDADDA RHYLDGRDFD GSRITVEASR GAPRGSRDAR DNGSRGPPPG
101: SGRCFNCGVD GHWARDCTAG DWKNKCYRCG ERGHIERNCK NSASPKKARG GGSYSRSPVK SRSPRRRRSP SRSRSYSRGR SYSRSRSPVR RERSVEDRSL
201: SPKAMERSVS PRGKDQSMSP ERRVVDASPK REKQEGSDYE GSPKVNGNGK SSVSPIVGGE ESPAGLDGQD RSPIDDEPEL NRSSPKGSES P

Best Arabidopsis Sequence Match ( AT3G53500.2 )
(BLAST)

001: MPRYDDRYGN TRLYVGRLSS RTRTRDLERL FSRYGRVRDV DMKRDYAFVE FSDPRDADDA RYYLDGRDFD GSRITVEASR GAPRGSRDNG SRGPPPGSGR
101: CFNCGVDGHW ARDCTAGDWK NKCYRCGERG HIERNCKNSP SPKKARQGGS YSRSPVKSRS PRRRRSPSRS RSYSRGRSYS RSRSPVRREK SVEDRSRSPK
201: AMERSVSPKG RDQSLSPDRK VIDASPKRGS DYDGSPKENG NGRNSASPIV GGGESPVGLN GQDRSPIDDE AELSRPSPKG SESP

Arabidopsis Description

RS2Z32RSZ32 [Source:UniProtKB/TrEMBL;Acc:A0A178V7M8]
SUBAcon: [mitochondrion,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.