CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER87987
EER88795
EER91800
EER92211
EER94870
EER95096
EER97037
EER97602
EES07659
EES10309
EES16196
KXG21829
KXG32406
KXG36736
KXG39239
KXG39307
OQU85289

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G37340.1	EER94870	AT1G02840.1	18674533
AT2G37340.1	KXG21829	AT1G02840.1	18674533
AT2G37340.1	KXG32406	AT1G02840.1	18674533
AT2G37340.1	EER88795	AT1G53720.1	16497658
AT2G37340.1	EER97037	AT2G43370.1	15987817
AT2G37340.1	EER92211	AT3G13570.1	18674533
AT2G37340.1	EER97602	AT3G13570.1	18674533
AT2G37340.1	EER91800	AT3G50670.1	18674533
AT2G37340.1	EER95096	AT3G50670.1	18674533
AT2G37340.1	EES10309	AT3G55460.1	18674533
AT2G37340.1	EES16196	AT3G55460.1	18674533
AT2G37340.1	EES10309	AT3G55460.1	21798944
AT2G37340.1	EES16196	AT3G55460.1	21798944
AT2G37340.1	EER87987	AT4G31580.1	18674533
AT2G37340.1	EES07659	AT4G31580.1	18674533
AT2G37340.1	OQU85289	AT4G31580.1	18674533
AT2G37340.1	KXG39307	AT5G18810.1	18674533
AT2G37340.1	KXG36736	AT5G64200.2	18674533
AT2G37340.1	KXG39239	AT5G64200.2	18674533

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os01t0155600-01	Rice	nucleus	82.43	75.31
TraesCS3B01G151100.1	Wheat	nucleus	76.01	69.66
TraesCS3D01G134500.1	Wheat	nucleus	75.68	69.14
TraesCS3A01G308000.1	Wheat	nucleus	76.01	67.57
KRH67593	Soybean	endoplasmic reticulum	61.82	63.76
PGSC0003DMT400060435	Potato	nucleus	64.53	63.67
KRG95876	Soybean	nucleus	61.49	63.41
GSMUA_Achr10P...	Banana	nucleus	68.24	62.15
KXG21152	Sorghum	nucleus	65.2	61.86
KRH67596	Soybean	nucleus	61.82	61.2
CDX80835	Canola	nucleus	54.39	60.75
CDX78183	Canola	nucleus	57.43	60.07
CDX73550	Canola	nucleus	57.09	59.51
CDX79732	Canola	nucleus	58.78	59.39
GSMUA_Achr6P15450_001	Banana	nucleus	67.57	59.35
CDY11223	Canola	nucleus	52.7	59.32
KRG95883	Soybean	nucleus	59.46	59.26
AT3G53500.2	Thale cress	mitochondrion, nucleus	56.42	58.8
CDY07586	Canola	mitochondrion, nucleus	57.09	58.68
VIT_08s0040g02860.t01	Wine grape	nucleus	52.7	58.65
AT2G37340.1	Thale cress	nucleus	57.09	58.28
Bra005756.1-P	Field mustard	nucleus	45.27	58.26
CDY52755	Canola	mitochondrion, nucleus	57.09	58.08
Bra003139.1-P	Field mustard	mitochondrion, nucleus	57.09	58.08
Solyc09g005980.2.1	Tomato	nucleus	61.15	57.46
Bra007004.1-P	Field mustard	nucleus	57.43	57.24
PGSC0003DMT400061471	Potato	nucleus	60.47	56.83
Solyc05g054920.2.1	Tomato	nucleus	64.53	56.68
EES18924	Sorghum	nucleus	64.53	56.01
CDY46773	Canola	nucleus	59.12	55.38
Bra023114.1-P	Field mustard	nucleus	59.12	55.38
KXG21387	Sorghum	nucleus	48.31	53.96
OQU77498	Sorghum	nucleus	18.58	49.55
KRH42195	Soybean	endoplasmic reticulum	43.58	46.91
KRH58317	Soybean	nucleus	32.09	43.38
KXG32406	Sorghum	cytosol	28.72	32.82
KXG21829	Sorghum	nucleus	30.41	32.37
EER94870	Sorghum	mitochondrion, nucleus	29.73	30.77
KXG21391	Sorghum	nucleus	38.51	28.5

Protein Annotations

MapMan:16.4.6.5	Gene3D:3.30.70.330	Gene3D:4.10.60.10	EntrezGene:8059125	UniProt:C5XPA0	EnsemblPlants:EES00292
ProteinID:EES00292	ProteinID:EES00292.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488
GO:GO:0008270	InterPro:IPR000504	InterPro:IPR001878	InterPro:IPR012677	EMBL:KC425063	InterPro:Nucleotide-bd_a/b_plait_sf
PFAM:PF00076	PFAM:PF00098	PFscan:PS50102	PFscan:PS50158	PANTHER:PTHR23147	PANTHER:PTHR23147:SF39
InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00343	SMART:SM00360	EnsemblPlantsGene:SORBI_3003G064400	SUPFAM:SSF54928
SUPFAM:SSF57756	unigene:Sbi.2702	UniParc:UPI0001A846A2	RefSeq:XP_002455172.1	InterPro:Znf_CCHC	InterPro:Znf_CCHC_sf
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr3:+:5567077..5571282

Molecular Weight (calculated)

34192.1 Da

IEP (calculated)

10.960

GRAVY (calculated)

-1.649

Length

296 amino acids

Sequence
(BLAST)

001: MPRYDDRYND RYDDRYDDRY GGNTRLYVGR VSSRTRTRDL EDLFGRYGRV RYVDMKHEFA FVEFSDPRDA DDARYHLDDR EFDGSRLIVE FAKGIPRGPG
101: GSREYMGKGP PPGSGRCFNC GMDGHWARDC KAGDWKNRCY RCGDRGHIER DCQNSPKNLR RGRSYSRSPS PRRERSPVRS YSRSRSRGYS RSRSPRQNSR
201: DERSPRDSRS PRRSPRDSRS PRRSPSLSKG RDRSPSPNGS RSPAPRERNG SDYSMSPRRD DSRSPADHLR REISPAANGR SPSPGVNDNG NHRSSP

Best Arabidopsis Sequence Match ( AT3G53500.2 )
(BLAST)

001: MPRYDDRYGN TRLYVGRLSS RTRTRDLERL FSRYGRVRDV DMKRDYAFVE FSDPRDADDA RYYLDGRDFD GSRITVEASR GAPRGSRDNG SRGPPPGSGR
101: CFNCGVDGHW ARDCTAGDWK NKCYRCGERG HIERNCKNSP SPKKARQGGS YSRSPVKSRS PRRRRSPSRS RSYSRGRSYS RSRSPVRREK SVEDRSRSPK
201: AMERSVSPKG RDQSLSPDRK VIDASPKRGS DYDGSPKENG NGRNSASPIV GGGESPVGLN GQDRSPIDDE AELSRPSPKG SESP

Arabidopsis Description

RS2Z32RSZ32 [Source:UniProtKB/TrEMBL;Acc:A0A178V7M8]
SUBAcon: [mitochondrion,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.