CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 3
plastid 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
iPSORT:	mitochondrion
MultiLoc:	nucleus
Plant-mPloc:	nucleus, plastid
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
EER88795
EER92211
EER94870
EER97037
EER97602
EES00292
EES10309
EES16196
EES18924
KXG21152
KXG21387
KXG21391
KXG21829
KXG32406
KXG39307
OQU77498

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G64200.2	EER94870	AT1G02840.1	18674533
AT5G64200.2	KXG21829	AT1G02840.1	18674533
AT5G64200.2	KXG32406	AT1G02840.1	18674533
AT5G64200.2	EER88795	AT1G53720.1	16497658
AT5G64200.2	EES00292	AT2G37340.1	18674533
AT5G64200.2	EES18924	AT2G37340.1	18674533
AT5G64200.2	KXG21152	AT2G37340.1	18674533
AT5G64200.2	KXG21387	AT2G37340.1	18674533
AT5G64200.2	KXG21391	AT2G37340.1	18674533
AT5G64200.2	OQU77498	AT2G37340.1	18674533
AT5G64200.2	EER97037	AT2G43370.1	15987817
AT5G64200.2	EER92211	AT3G13570.1	18674533
AT5G64200.2	EER97602	AT3G13570.1	18674533
AT5G64200.2	EES10309	AT3G55460.1	18674533
AT5G64200.2	EES16196	AT3G55460.1	18674533
AT5G64200.2	KXG39307	AT5G18810.1	18674533

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d006906_P010	Maize	mitochondrion	94.4	93.65
HORVU2Hr1G029640.1	Barley	mitochondrion	49.6	89.21
Zm00001d022189_P002	Maize	nucleus	88.8	87.4
GSMUA_Achr10P...	Banana	nucleus	65.6	69.2
VIT_18s0001g05550.t01	Wine grape	nucleus	69.2	67.32
Solyc01g105140.2.1	Tomato	nucleus	67.2	66.14
TraesCS2A01G162700.3	Wheat	nucleus	62.8	65.97
PGSC0003DMT400032709	Potato	nucleus	66.8	65.75
KRH42160	Soybean	nucleus	70.0	65.54
KRH58277	Soybean	nucleus	70.0	65.54
VIT_12s0142g00110.t01	Wine grape	nucleus	66.8	65.49
Solyc04g074040.2.1	Tomato	nucleus	67.2	65.12
PGSC0003DMT400045694	Potato	nucleus	66.4	64.34
KXG39239	Sorghum	nucleus	58.4	61.86
Bra024276.1-P	Field mustard	nucleus	66.4	59.29
KXG25727	Sorghum	nucleus	62.8	57.51
AT5G64200.2	Thale cress	nucleus	64.0	52.81
CDX84503	Canola	nucleus	44.0	40.59
EER97602	Sorghum	nucleus	27.6	33.01
EER92211	Sorghum	nucleus	27.6	32.39
EES16196	Sorghum	nucleus	30.8	29.39
EES10309	Sorghum	nucleus	29.6	27.41
KXG39307	Sorghum	nucleus	24.4	25.31
CDY43799	Canola	vacuole	31.2	24.15

Protein Annotations

Gene3D:3.30.70.330	MapMan:35.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488
InterPro:IPR000504	InterPro:IPR012677	EMBL:KC425069	ProteinID:KXG36733.1	ProteinID:KXG36735.1	EnsemblPlants:KXG36736
ProteinID:KXG36736	ProteinID:KXG36736.1	UniProt:M1H9A6	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102
PANTHER:PTHR23147	PANTHER:PTHR23147:SF42	InterPro:RBD_domain_sf	InterPro:RRM_dom	InterPro:RRM_dom_euk	SMART:SM00360
SMART:SM00361	EnsemblPlantsGene:SORBI_3002G380500	SUPFAM:SSF54928	UniParc:UPI0002207140	SEG:seg	:

Description

hypothetical protein

Coordinates

chr2:+:73651392..73655697

Molecular Weight (calculated)

29690.4 Da

IEP (calculated)

11.509

GRAVY (calculated)

-1.606

Length

250 amino acids

Sequence
(BLAST)

001: MSRFGRSGPP PIRDTYSLLV LNITFRTTAD DLFPLFDKYG EIVDIYIPRD RRTGDSRGFA FVRYKYEDEA QKAVDRLDGR LVDGREIMVQ FAKYGPNAER
101: INKGRIVEPV PRPRGRSRSR SPRRRYRDDY RDDYQDRDYR RRSRSRSRDR YARDRYRDRD YRRRSPSRSY SPEDYKKRGR DSLSPARRSP SRSRSRSYSP
201: DDYKRRGRDS ASPASRSPSR SPPRKMSPSP ERSPAKHNDD RSPRSRSPST

Best Arabidopsis Sequence Match ( AT5G64200.1 )
(BLAST)

001: MSHFGRSGPP DISDTYSLLV LNITFRTTAD DLYPLFAKYG KVVDVFIPRD RRTGDSRGFA FVRYKYKDEA HKAVERLDGR VVDGREITVQ FAKYGPNAEK
101: ISKGRVVEPP PKSRRSRSRS PRRSRSPRRS RSPPRRRSPR RSRSPRRRSR DDYREKDYRK RSRSRSYDRR ERHEEKDRDH RRRTRSRSAS PDEKRRVRGR
201: YDNESRSHSR SLSASPARRS PRSSSPQKTS PAREVSPDKR SNERSPSPRR SLSPRSPALQ KASPSKEMSP ERRSNERSPS PGSPAPLRKV DAASRSQSPY
301: AAE

Arabidopsis Description

SC35Serine/arginine-rich splicing factor SC35 [Source:UniProtKB/Swiss-Prot;Acc:Q9FMG4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.