Factsheet for Solyc04g074040.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 25464976
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400045694	Potato	nucleus	98.06	98.06
VIT_18s0001g05550.t01	Wine grape	nucleus	79.84	80.16
GSMUA_Achr10P...	Banana	nucleus	70.16	76.37
HORVU2Hr1G029640.1	Barley	mitochondrion	40.7	75.54
Solyc01g105140.2.1	Tomato	nucleus	69.77	70.87
KXG36736	Sorghum	nucleus	65.12	67.2
Zm00001d006906_P010	Maize	mitochondrion	65.12	66.67
Zm00001d022189_P002	Maize	nucleus	62.02	62.99
TraesCS2D01G169700.5	Wheat	nucleus	65.12	61.09
KXG39239	Sorghum	nucleus	54.65	59.75
Os07t0623300-01	Rice	nucleus	63.18	59.27
TraesCS2A01G162700.3	Wheat	nucleus	51.55	55.88
TraesCS2B01G188600.1	Wheat	nucleus, plastid	58.91	55.88
HORVU2Hr1G029630.1	Barley	plastid	26.74	50.74
CDX84503	Canola	nucleus	48.45	46.13
Solyc01g005820.2.1	Tomato	nucleus	27.52	28.17
CDY43799	Canola	vacuole	34.11	27.24
Solyc01g080660.2.1	Tomato	nucleus	15.89	24.7
Zm00001d029380_P002	Maize	cytosol, nucleus, plasma membrane	38.76	23.15

Protein Annotations

Gene3D:3.30.70.330	MapMan:35.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003729
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005654
GO:GO:0005737	GO:GO:0005829	GO:GO:0016020	GO:GO:0016607	InterPro:IPR000504	InterPro:IPR012677
UniProt:K4BTU2	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR23147	PANTHER:PTHR23147:SF42
InterPro:RBD_domain_sf	InterPro:RRM_dom	InterPro:RRM_dom_euk	SMART:SM00360	SMART:SM00361	SUPFAM:SSF54928
EnsemblPlantsGene:Solyc04g074040.2	EnsemblPlants:Solyc04g074040.2.1	UniParc:UPI0002767389	SEG:seg	:	:

Description

No Description!

Coordinates

chr4:+:60062294..60066804

Molecular Weight (calculated)

30119.1 Da

IEP (calculated)

12.062

GRAVY (calculated)

-1.641

Length

258 amino acids

Sequence
(BLAST)

001: MSHFGRSGPP DIKDTYSLLV LNVTFRTTAD DLFPLFDKYG KVVDVFIPRD RRTGDSRGFA FVRYKYQDEA QKAVEKLDGR VVDGREIMVR FAKYGPNAER
101: IDKGRILEPV QRPKGRSRSR SPRPRHRDHR DKDSRRRSRS RSRSRSRGRY ERDQYRGRDR DNRHRSRSRS PDYHRGRGRG KYDEDRRSRS RSHGRSASPA
201: RRSPSPRRSP SPRRTTPPRD ASPDGRNHKD RSPTPKSISP RGRRAGSRSP LPRSDADD

Best Arabidopsis Sequence Match ( AT5G64200.1 )
(BLAST)

001: MSHFGRSGPP DISDTYSLLV LNITFRTTAD DLYPLFAKYG KVVDVFIPRD RRTGDSRGFA FVRYKYKDEA HKAVERLDGR VVDGREITVQ FAKYGPNAEK
101: ISKGRVVEPP PKSRRSRSRS PRRSRSPRRS RSPPRRRSPR RSRSPRRRSR DDYREKDYRK RSRSRSYDRR ERHEEKDRDH RRRTRSRSAS PDEKRRVRGR
201: YDNESRSHSR SLSASPARRS PRSSSPQKTS PAREVSPDKR SNERSPSPRR SLSPRSPALQ KASPSKEMSP ERRSNERSPS PGSPAPLRKV DAASRSQSPY
301: AAE

Arabidopsis Description

SC35Serine/arginine-rich splicing factor SC35 [Source:UniProtKB/Swiss-Prot;Acc:Q9FMG4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.