Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- mitochondrion 4
- nucleus 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KXG36736 | Sorghum | nucleus | 87.4 | 88.8 |
| HORVU2Hr1G029640.1 | Barley | mitochondrion | 47.24 | 86.33 |
| Zm00001d006906_P010 | Maize | mitochondrion | 85.04 | 85.71 |
| GSMUA_Achr10P... | Banana | nucleus | 61.81 | 66.24 |
| VIT_18s0001g05550.t01 | Wine grape | nucleus | 64.57 | 63.81 |
| Solyc01g105140.2.1 | Tomato | nucleus | 62.6 | 62.6 |
| PGSC0003DMT400032709 | Potato | nucleus | 62.2 | 62.2 |
| Solyc04g074040.2.1 | Tomato | nucleus | 62.99 | 62.02 |
| VIT_12s0142g00110.t01 | Wine grape | nucleus | 62.2 | 61.96 |
| KRH42160 | Soybean | nucleus | 64.57 | 61.42 |
| KRH58277 | Soybean | nucleus | 64.57 | 61.42 |
| PGSC0003DMT400045694 | Potato | nucleus | 62.2 | 61.24 |
| TraesCS2A01G162700.3 | Wheat | nucleus | 55.12 | 58.82 |
| Bra024276.1-P | Field mustard | nucleus | 61.02 | 55.36 |
| AT5G64200.2 | Thale cress | nucleus | 59.84 | 50.16 |
| Zm00001d052803_P004 | Maize | nucleus | 55.12 | 46.51 |
| Zm00001d031269_P002 | Maize | nucleus | 55.91 | 41.28 |
| CDX84503 | Canola | nucleus | 39.76 | 37.27 |
| Zm00001d029629_P001 | Maize | nucleus | 5.91 | 33.33 |
| Zm00001d022243_P002 | Maize | nucleus | 26.38 | 32.06 |
| Zm00001d019443_P002 | Maize | nucleus | 12.6 | 30.19 |
| Zm00001d047401_P001 | Maize | nucleus | 25.59 | 30.09 |
| Zm00001d029305_P001 | Maize | nucleus | 19.29 | 29.88 |
| Zm00001d005285_P001 | Maize | nucleus | 15.75 | 27.97 |
| Zm00001d004470_P001 | Maize | nucleus | 11.81 | 27.03 |
| Zm00001d016504_P001 | Maize | nucleus | 7.87 | 26.67 |
| Zm00001d012570_P002 | Maize | extracellular | 16.93 | 26.38 |
| Zm00001d029380_P002 | Maize | cytosol, nucleus, plasma membrane | 39.76 | 23.38 |
| Zm00001d048609_P001 | Maize | nucleus, plastid | 25.98 | 22.92 |
| Zm00001d029256_P002 | Maize | nucleus | 21.65 | 22.45 |
| Zm00001d004722_P001 | Maize | cytosol | 9.06 | 21.7 |
| Zm00001d010881_P001 | Maize | nucleus | 15.35 | 21.31 |
| CDY43799 | Canola | vacuole | 26.77 | 21.05 |
| Zm00001d005739_P004 | Maize | cytosol | 8.66 | 20.0 |
| Zm00001d030739_P002 | Maize | mitochondrion, nucleus, plastid | 28.35 | 19.51 |
| Zm00001d010176_P001 | Maize | cytosol | 8.66 | 19.3 |
| Zm00001d013841_P001 | Maize | endoplasmic reticulum, extracellular, vacuole | 16.14 | 18.98 |
| Zm00001d015189_P001 | Maize | nucleus | 12.99 | 18.75 |
| Zm00001d043759_P001 | Maize | cytosol | 9.84 | 16.23 |
Protein Annotations
| EntrezGene:100383636 | Gene3D:3.30.70.330 | MapMan:35.1 | UniProt:A0A1D6IK73 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | ProteinID:ONM59805.1 |
| ProteinID:ONM59810.1 | PFAM:PF00076 | PFscan:PS50102 | PANTHER:PTHR23147 | PANTHER:PTHR23147:SF42 | InterPro:RBD_domain_sf |
| InterPro:RRM_dom | InterPro:RRM_dom_euk | SMART:SM00360 | SMART:SM00361 | SUPFAM:SSF54928 | UniParc:UPI0008425CD8 |
| EnsemblPlantsGene:Zm00001d022189 | EnsemblPlants:Zm00001d022189_P002 | EnsemblPlants:Zm00001d022189_T002 | SEG:seg | : | : |
Description
Serine/arginine-rich splicing factor SC35
Coordinates
chr7:+:172321424..172327703
Molecular Weight (calculated)
29945.9 Da
IEP (calculated)
10.803
GRAVY (calculated)
-1.410
Length
254 amino acids
Sequence
(BLAST)
(BLAST)
001: MSRFGRSGPP PPIRDTYSLL VLNITFRTTA DDLFPLFDKY GEIVDIYIPR DRRTGDSRGF AFVRYKYEDE AQKAVERLDG RLVDGREIMV QFAKYGPNAE
101: RINKGRIVEP VPRPGGRSRS HSPRRRYRDD YRDDHDRDYR RRSRSRSRDR YTRDRYRDRD YRHRSPSRSY SPDDYKKRGR DSLSPERRSP RRSRSPDDYK
201: RRGRDSASPA SKSPSRSPPR KMSPSPERSP DEWTCSDPMC THLLDGGLFS AKVV
101: RINKGRIVEP VPRPGGRSRS HSPRRRYRDD YRDDHDRDYR RRSRSRSRDR YTRDRYRDRD YRHRSPSRSY SPDDYKKRGR DSLSPERRSP RRSRSPDDYK
201: RRGRDSASPA SKSPSRSPPR KMSPSPERSP DEWTCSDPMC THLLDGGLFS AKVV
001: MSHFGRSGPP DISDTYSLLV LNITFRTTAD DLYPLFAKYG KVVDVFIPRD RRTGDSRGFA FVRYKYKDEA HKAVERLDGR VVDGREITVQ FAKYGPNAEK
101: ISKGRVVEPP PKSRRSRSRS PRRSRSPRRS RSPPRRRSPR RSRSPRRRSR DDYREKDYRK RSRSRSYDRR ERHEEKDRDH RRRTRSRSAS PDEKRRVRGR
201: YDNESRSHSR SLSASPARRS PRSSSPQKTS PAREVSPDKR SNERSPSPRR SLSPRSPALQ KASPSKEMSP ERRSNERSPS PGSPAPLRKV DAASRSQSPY
301: AAE
101: ISKGRVVEPP PKSRRSRSRS PRRSRSPRRS RSPPRRRSPR RSRSPRRRSR DDYREKDYRK RSRSRSYDRR ERHEEKDRDH RRRTRSRSAS PDEKRRVRGR
201: YDNESRSHSR SLSASPARRS PRSSSPQKTS PAREVSPDKR SNERSPSPRR SLSPRSPALQ KASPSKEMSP ERRSNERSPS PGSPAPLRKV DAASRSQSPY
301: AAE
Arabidopsis Description
SC35Serine/arginine-rich splicing factor SC35 [Source:UniProtKB/Swiss-Prot;Acc:Q9FMG4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.