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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 5
  • plastid 1
  • mitochondrion 1
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, mitochondrion, nucleus, plastid
BaCelLo:nucleus
EpiLoc:nucleus
MultiLoc:nucleus
Plant-mPloc:nucleus, plastid
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:cytosol
nucleus: 28394025
msms PMID: 28394025 doi
AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400032709 Potato nucleus 96.06 96.06
HORVU2Hr1G029640.1 Barley mitochondrion 42.13 76.98
KRH58277 Soybean nucleus 74.8 71.16
VIT_12s0142g00110.t01 Wine grape nucleus 71.26 70.98
KRH42160 Soybean nucleus 74.02 70.41
Solyc04g074040.2.1 Tomato nucleus 70.87 69.77
Zm00001d006906_P010 Maize mitochondrion 66.93 67.46
KXG36736 Sorghum nucleus 66.14 67.2
Zm00001d022189_P002 Maize nucleus 62.6 62.6
TraesCS2D01G169700.5 Wheat nucleus 66.54 61.45
Os07t0623300-01 Rice nucleus 65.35 60.36
KXG39239 Sorghum nucleus 55.51 59.75
Bra024276.1-P Field mustard nucleus 64.57 58.57
TraesCS2B01G188600.1 Wheat nucleus, plastid 59.45 55.51
TraesCS2A01G162700.3 Wheat nucleus 51.97 55.46
AT5G64200.2 Thale cress nucleus 62.99 52.81
HORVU2Hr1G029630.1 Barley plastid 27.17 50.74
CDX84503 Canola nucleus 47.24 44.28
Solyc01g005820.2.1 Tomato nucleus 27.56 27.78
CDY43799 Canola vacuole 33.86 26.63
Solyc01g080660.2.1 Tomato nucleus 16.93 25.9
Zm00001d029380_P002 Maize cytosol, nucleus, plasma membrane 39.37 23.15
Protein Annotations
Gene3D:3.30.70.330MapMan:35.1GO:GO:0003674GO:GO:0003676GO:GO:0003723GO:GO:0005488
InterPro:IPR000504InterPro:IPR012677UniProt:K4B284InterPro:Nucleotide-bd_a/b_plait_sfPFAM:PF00076PFscan:PS50102
PANTHER:PTHR23147PANTHER:PTHR23147:SF42InterPro:RBD_domain_sfInterPro:RRM_domInterPro:RRM_dom_eukSMART:SM00360
SMART:SM00361SUPFAM:SSF54928EnsemblPlantsGene:Solyc01g105140.2EnsemblPlants:Solyc01g105140.2.1UniParc:UPI0002768D86SEG:seg
Description
Serine/arginine-rich splicing factor SC35 [Source:Projected from Arabidopsis thaliana (AT5G64200) UniProtKB/Swiss-Prot;Acc:Q9FMG4]
Coordinates
chr1:-:93407275..93413092
Molecular Weight (calculated)
30017.0 Da
IEP (calculated)
11.637
GRAVY (calculated)
-1.468
Length
254 amino acids
Sequence
(BLAST)
001: MSHFGRTGPP DIADTYSLLV LNITFRTSAD DLFPLFDKYG KVVDIFIPRD RRTGESRGFA FVRYKYAEEA QKAVDRLDGR VVDGREMAVQ FAKYGPNAER
101: IHQGRIIEKV PGFKGSSRSR SPRRRYRDDY HRDREYRRSR SRSVDRYERD RYRQRERDYR HRSRSRSLSP DYDRDRGRRR DRKHYRRSPS VDSASPSRRS
201: PSPHRKESPP RSLSPTKGSP VRRVRNERSP TPRSRSPPGR AMDSRSPSPR VDED
Best Arabidopsis Sequence Match ( AT5G18810.2 )
(BLAST)
001: MARARSRSRS YSPRPRDRSP PRERKGYDDN RLRERPSSRD HESSGPSGLL IRNLPLDARP NDLRDSFERF GPLKDIYLPR NYYTGEPRGF GFVKYRYAED
101: AAEAMKRMNH KVIGGREIAI VFAEENRKTP QEMRTTNGTS GRHGDYKRTS HRSPRRRYRS HSRSRSPPRR ESRHSKVRED DLYSPRRRSR SISRSPLPRN
201: EREYKSRNCR SPREERVLTP IRSRCLSRSR SRSLR
Arabidopsis Description
SCL28Serine/arginine-rich SC35-like splicing factor SCL28 [Source:UniProtKB/Swiss-Prot;Acc:Q1PDV2]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.