Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- plastid 1
- mitochondrion 1
- cytosol 1
Predictors | GFP | MS/MS | Papers |
---|---|---|---|
nucleus:
28394025
|
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
PGSC0003DMT400032709 | Potato | nucleus | 96.06 | 96.06 |
HORVU2Hr1G029640.1 | Barley | mitochondrion | 42.13 | 76.98 |
KRH58277 | Soybean | nucleus | 74.8 | 71.16 |
VIT_12s0142g00110.t01 | Wine grape | nucleus | 71.26 | 70.98 |
KRH42160 | Soybean | nucleus | 74.02 | 70.41 |
Solyc04g074040.2.1 | Tomato | nucleus | 70.87 | 69.77 |
Zm00001d006906_P010 | Maize | mitochondrion | 66.93 | 67.46 |
KXG36736 | Sorghum | nucleus | 66.14 | 67.2 |
Zm00001d022189_P002 | Maize | nucleus | 62.6 | 62.6 |
TraesCS2D01G169700.5 | Wheat | nucleus | 66.54 | 61.45 |
Os07t0623300-01 | Rice | nucleus | 65.35 | 60.36 |
KXG39239 | Sorghum | nucleus | 55.51 | 59.75 |
Bra024276.1-P | Field mustard | nucleus | 64.57 | 58.57 |
TraesCS2B01G188600.1 | Wheat | nucleus, plastid | 59.45 | 55.51 |
TraesCS2A01G162700.3 | Wheat | nucleus | 51.97 | 55.46 |
AT5G64200.2 | Thale cress | nucleus | 62.99 | 52.81 |
HORVU2Hr1G029630.1 | Barley | plastid | 27.17 | 50.74 |
CDX84503 | Canola | nucleus | 47.24 | 44.28 |
Solyc01g005820.2.1 | Tomato | nucleus | 27.56 | 27.78 |
CDY43799 | Canola | vacuole | 33.86 | 26.63 |
Solyc01g080660.2.1 | Tomato | nucleus | 16.93 | 25.9 |
Zm00001d029380_P002 | Maize | cytosol, nucleus, plasma membrane | 39.37 | 23.15 |
Protein Annotations
Gene3D:3.30.70.330 | MapMan:35.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 |
InterPro:IPR000504 | InterPro:IPR012677 | UniProt:K4B284 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFscan:PS50102 |
PANTHER:PTHR23147 | PANTHER:PTHR23147:SF42 | InterPro:RBD_domain_sf | InterPro:RRM_dom | InterPro:RRM_dom_euk | SMART:SM00360 |
SMART:SM00361 | SUPFAM:SSF54928 | EnsemblPlantsGene:Solyc01g105140.2 | EnsemblPlants:Solyc01g105140.2.1 | UniParc:UPI0002768D86 | SEG:seg |
Description
Serine/arginine-rich splicing factor SC35 [Source:Projected from Arabidopsis thaliana (AT5G64200) UniProtKB/Swiss-Prot;Acc:Q9FMG4]
Coordinates
chr1:-:93407275..93413092
Molecular Weight (calculated)
30017.0 Da
IEP (calculated)
11.637
GRAVY (calculated)
-1.468
Length
254 amino acids
Sequence
(BLAST)
(BLAST)
001: MSHFGRTGPP DIADTYSLLV LNITFRTSAD DLFPLFDKYG KVVDIFIPRD RRTGESRGFA FVRYKYAEEA QKAVDRLDGR VVDGREMAVQ FAKYGPNAER
101: IHQGRIIEKV PGFKGSSRSR SPRRRYRDDY HRDREYRRSR SRSVDRYERD RYRQRERDYR HRSRSRSLSP DYDRDRGRRR DRKHYRRSPS VDSASPSRRS
201: PSPHRKESPP RSLSPTKGSP VRRVRNERSP TPRSRSPPGR AMDSRSPSPR VDED
101: IHQGRIIEKV PGFKGSSRSR SPRRRYRDDY HRDREYRRSR SRSVDRYERD RYRQRERDYR HRSRSRSLSP DYDRDRGRRR DRKHYRRSPS VDSASPSRRS
201: PSPHRKESPP RSLSPTKGSP VRRVRNERSP TPRSRSPPGR AMDSRSPSPR VDED
001: MARARSRSRS YSPRPRDRSP PRERKGYDDN RLRERPSSRD HESSGPSGLL IRNLPLDARP NDLRDSFERF GPLKDIYLPR NYYTGEPRGF GFVKYRYAED
101: AAEAMKRMNH KVIGGREIAI VFAEENRKTP QEMRTTNGTS GRHGDYKRTS HRSPRRRYRS HSRSRSPPRR ESRHSKVRED DLYSPRRRSR SISRSPLPRN
201: EREYKSRNCR SPREERVLTP IRSRCLSRSR SRSLR
101: AAEAMKRMNH KVIGGREIAI VFAEENRKTP QEMRTTNGTS GRHGDYKRTS HRSPRRRYRS HSRSRSPPRR ESRHSKVRED DLYSPRRRSR SISRSPLPRN
201: EREYKSRNCR SPREERVLTP IRSRCLSRSR SRSLR
Arabidopsis Description
SCL28Serine/arginine-rich SC35-like splicing factor SCL28 [Source:UniProtKB/Swiss-Prot;Acc:Q1PDV2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.