Factsheet for VIT_12s0142g00110.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_05s0102g00080.t01
VIT_07s0005g00320.t01
VIT_08s0040g02860.t01
VIT_13s0019g01060.t01
VIT_14s0030g00480.t01
VIT_19s0027g01660.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G64200.2	VIT_07s0005g00320.t01	AT1G02840.1	18674533
AT5G64200.2	VIT_19s0027g01660.t01	AT1G53720.1	16497658
AT5G64200.2	VIT_08s0040g02860.t01	AT2G37340.1	18674533
AT5G64200.2	VIT_05s0102g00080.t01	AT2G43370.1	15987817
AT5G64200.2	VIT_13s0019g01060.t01	AT3G55460.1	18674533
AT5G64200.2	VIT_14s0030g00480.t01	AT5G18810.1	18674533

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU2Hr1G029640.1	Barley	mitochondrion	42.75	78.42
KRH58277	Soybean	nucleus	78.04	74.53
VIT_18s0001g05550.t01	Wine grape	nucleus	74.51	73.93
KRH42160	Soybean	nucleus	76.86	73.41
Solyc01g105140.2.1	Tomato	nucleus	70.98	71.26
PGSC0003DMT400032709	Potato	nucleus	70.2	70.47
KXG36736	Sorghum	nucleus	65.49	66.8
Zm00001d006906_P010	Maize	mitochondrion	63.92	64.68
Zm00001d022189_P002	Maize	nucleus	61.96	62.2
TraesCS2D01G169700.5	Wheat	nucleus	65.88	61.09
Bra024276.1-P	Field mustard	nucleus	66.67	60.71
KXG39239	Sorghum	nucleus	56.08	60.59
Os07t0623300-01	Rice	nucleus	64.71	60.0
AT5G64200.2	Thale cress	nucleus	66.67	56.11
TraesCS2A01G162700.3	Wheat	nucleus	52.16	55.88
TraesCS2B01G188600.1	Wheat	nucleus, plastid	59.61	55.88
HORVU2Hr1G029630.1	Barley	plastid	27.45	51.47
CDX84503	Canola	nucleus	45.1	42.44
VIT_06s0004g00710.t01	Wine grape	nucleus	30.2	31.43
VIT_14s0030g00480.t01	Wine grape	nucleus	30.59	27.18
CDY43799	Canola	vacuole	31.76	25.08
Zm00001d029380_P002	Maize	cytosol, nucleus, plasma membrane	41.57	24.54
VIT_13s0019g01060.t01	Wine grape	nucleus	30.98	22.38

Protein Annotations

EntrezGene:100242306	wikigene:100242306	Gene3D:3.30.70.330	MapMan:35.1	ProteinID:CBI32954	ProteinID:CBI32954.3
UniProt:D7TR31	EMBL:FN596011	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488
InterPro:IPR000504	InterPro:IPR012677	EntrezGene:LOC100242306	wikigene:LOC100242306	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076
PFscan:PS50102	PANTHER:PTHR23147	PANTHER:PTHR23147:SF42	InterPro:RBD_domain_sf	InterPro:RRM_dom	InterPro:RRM_dom_euk
SMART:SM00360	SMART:SM00361	SUPFAM:SSF54928	UniParc:UPI00019846F0	ArrayExpress:VIT_12s0142g00110	EnsemblPlantsGene:VIT_12s0142g00110
EnsemblPlants:VIT_12s0142g00110.t01	RefSeq:XP_002274860	RefSeq:XP_002274860.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr12_random:-:94373..101613

Molecular Weight (calculated)

29829.5 Da

IEP (calculated)

11.530

GRAVY (calculated)

-1.404

Length

255 amino acids

Sequence
(BLAST)

001: MSHFGRSGPP DIKDTFSLLV LNITFRTTAD DLFPFFDKYG KVVDIFIPRD RRTGESRGFA FVRYKYADEA QKAVDRLDGR IVDGREITVQ FAKYGPNAER
101: IHKGRIVETF PKSRGRSRSH SPRRRYRDDN RDRDYRRRSR SRSYDRYESD RYRGRERDYR RRSRSHSASP DYRRGRYDDG RRNLSRSRSI DSVSPTRYTP
201: SPKRNFPPRV TPSPPRGGSQ DRLSGEERSP SRSISPRGRP AGSRSPSLHK SDADD

Best Arabidopsis Sequence Match ( AT5G18810.2 )
(BLAST)

001: MARARSRSRS YSPRPRDRSP PRERKGYDDN RLRERPSSRD HESSGPSGLL IRNLPLDARP NDLRDSFERF GPLKDIYLPR NYYTGEPRGF GFVKYRYAED
101: AAEAMKRMNH KVIGGREIAI VFAEENRKTP QEMRTTNGTS GRHGDYKRTS HRSPRRRYRS HSRSRSPPRR ESRHSKVRED DLYSPRRRSR SISRSPLPRN
201: EREYKSRNCR SPREERVLTP IRSRCLSRSR SRSLR

Arabidopsis Description

SCL28Serine/arginine-rich SC35-like splicing factor SCL28 [Source:UniProtKB/Swiss-Prot;Acc:Q1PDV2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.