Factsheet for VIT_19s0027g01660.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	cytosol, nucleus
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_01s0026g00250.t01
VIT_08s0040g02860.t01
VIT_12s0142g00110.t01
VIT_14s0060g02290.t01
VIT_15s0046g00060.t01
VIT_16s0022g02110.t01
VIT_18s0001g00860.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G53720.1	VIT_14s0060g02290.t01	AT1G09140.1	16497658
AT1G53720.1	VIT_01s0026g00250.t01	AT1G23860.1	16497658
AT1G53720.1	VIT_08s0040g02860.t01	AT2G37340.1	16497658
AT1G53720.1	VIT_15s0046g00060.t01	AT3G61860.1	16497658
AT1G53720.1	VIT_18s0001g00860.t01	AT4G35800.1	16497658
AT1G53720.1	VIT_16s0022g02110.t01	AT5G62190.1	16497658
AT1G53720.1	VIT_12s0142g00110.t01	AT5G64200.2	16497658

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400056014	Potato	cytosol	21.63	76.67
PGSC0003DMT400011164	Potato	cytosol	21.0	72.43
AT1G53720.1	Thale cress	nucleus	55.02	69.37
PGSC0003DMT400011166	Potato	nucleus	31.5	68.84
HORVU6Hr1G042040.1	Barley	endoplasmic reticulum	21.94	67.96
HORVU1Hr1G015670.5	Barley	cytosol	25.55	67.36
KRG93223	Soybean	nucleus	66.77	66.56
HORVU1Hr1G040970.1	Barley	cytosol, endoplasmic reticulum, mitochondrion	25.08	66.39
Zm00001d036620_P001	Maize	nucleus	45.77	65.32
PGSC0003DMT400069100	Potato	cytosol	35.11	65.31
Solyc07g066420.2.1	Tomato	nucleus	60.03	65.25
TraesCS3D01G065600.1	Wheat	cytosol	33.86	64.67
KRH13056	Soybean	nucleus	63.95	64.45
Bra030819.1-P	Field mustard	cytosol	54.86	64.34
TraesCS7A01G469800.1	Wheat	nucleus	53.76	61.36
TraesCS7D01G457200.1	Wheat	nucleus	53.13	60.64
HORVU7Hr1G107520.5	Barley	nucleus	52.98	60.47
TraesCS7B01G371900.1	Wheat	nucleus	52.98	60.47
Os06t0670500-01	Rice	cytosol	52.66	59.57
TraesCS4A01G064400.1	Wheat	nucleus	44.51	59.41
TraesCS3A01G064900.1	Wheat	cytosol	37.62	59.26
EER88795	Sorghum	cytosol	51.72	59.03
GSMUA_Achr10P...	Banana	cytosol	50.94	58.66
TraesCS4D01G241400.1	Wheat	nucleus	44.04	58.42
TraesCS4B01G241800.1	Wheat	nucleus	42.32	57.94
Os06t0670400-00	Rice	cytosol	41.22	56.08
CDY72459	Canola	cytosol, extracellular, plastid	9.25	50.43
VIT_15s0048g01780.t01	Wine grape	cytosol	10.81	43.12
VIT_08s0007g02900.t01	Wine grape	cytosol	10.97	42.17
CDY10512	Canola	nucleus	57.05	36.69
VIT_04s0008g01370.t01	Wine grape	cytosol	15.67	20.08
VIT_00s0513g00020.t01	Wine grape	cytosol	10.34	19.94
VIT_05s0077g01040.t01	Wine grape	cytosol, endoplasmic reticulum, nucleus	6.9	15.55
VIT_07s0129g00040.t01	Wine grape	cytosol	11.6	12.4
VIT_06s0061g01590.t01	Wine grape	cytosol	10.19	10.94

Protein Annotations

EntrezGene:100266806	wikigene:100266806	MapMan:18.12.1	Gene3D:2.40.100.10	Gene3D:3.30.70.330	Gene3D:4.10.60.10
ProteinID:CCB47199	ProteinID:CCB47199.1	InterPro:CRIP	InterPro:Cyclophilin-like_dom_sf	InterPro:Cyclophilin-type_PPIase	InterPro:Cyclophilin-type_PPIase_dom
InterPro:Cyclophilin_PPIL4	UniProt:F6H4R0	EMBL:FN595234	GO:GO:0000413	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003755	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0005829	GO:GO:0006139	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009058	GO:GO:0009987	GO:GO:0016853
GO:GO:0019538	GO:GO:1901407	InterPro:IPR000504	InterPro:IPR001878	InterPro:IPR002130	InterPro:IPR012677
InterPro:IPR029000	EntrezGene:LOC100266806	wikigene:LOC100266806	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFAM:PF00098
PFAM:PF00160	PRINTS:PR00153	PFscan:PS50072	PFscan:PS50102	PFscan:PS50158	PANTHER:PTHR11071
PANTHER:PTHR11071:SF156	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00343	SMART:SM00360	SUPFAM:SSF50891
SUPFAM:SSF54928	SUPFAM:SSF57756	UniParc:UPI000210A373	ArrayExpress:VIT_19s0027g01660	EnsemblPlantsGene:VIT_19s0027g01660	EnsemblPlants:VIT_19s0027g01660.t01
unigene:Vvi.8321	RefSeq:XP_002266085	RefSeq:XP_002266085.2	InterPro:Znf_CCHC	InterPro:Znf_CCHC_sf	SEG:seg

Description

No Description!

Coordinates

chr19:+:21921001..21934455

Molecular Weight (calculated)

74439.1 Da

IEP (calculated)

6.186

GRAVY (calculated)

-1.382

Length

638 amino acids

Sequence
(BLAST)

001: MSVLIVTSLG DIVVDLYTDR CPLTSKNFLK LCKIKYYNGC LFHMVQKDFT AQTGDPTATG TGGDSIYKFL YGDQARFFND EVHLDLKHSK TGTVAMASAG
101: ENLNASQFYF TLRDDLDYLD GKHTVFGEVA EGLETLTRIN EAYVDDKGRP YKNIRIKHTY ILDDPFGDPS QLTELIPDAS PEGKPKDEVD DDVRLEDDWV
201: PLDEQLDTSE LEELIRSKEA HSRAVVLESI GDIPDAEIKP PDNVLFVCKL NPVTEDEDLH TIFSRFGTVI SAEIIRDFKT GDSLCYAFIE FETNEACEQA
301: YFKMDNALID DRRIHVDFSQ SVSKLWSQYR RRDHQTGKGT GCFKCGAVDH IAKDCTGSPT KQQQPPKYIL KDNNTQHGGD NNSRYEMVFD EDTSESPKRE
401: KRRQDHGPED QIEKEKLNRR GSEDWKRRDH DKKDSDDRHR QSDKGQESRA SRLSGSRRDP YHHEERIDRE KHRERQDEGK RERDERDYRK RNADSDSHRE
501: RRDGRDERHH RKRNADGDRH VDRRDVGDYR KRDTDDDDHG DGRDGRDYRK RSADNDGRGD RRDDRDHRKT KADEDRRDKR DMRDEPSYRK RSADGDGNGG
601: RREERGHKRH STESNDDRDR RHRGDRRGKW TLHYECIL

Best Arabidopsis Sequence Match ( AT1G53720.1 )
(BLAST)

001: MSVLIVTSLG DIVIDLHSDK CPLTCKNFLK LCKIKYYNGC LFHTVQKDFT AQTGDPTGTG AGGDSIYKFL YGEQARFYKD EIHLDLKHSK TGTVAMASGG
101: ENLNASQFYF TLRDDLDYLD GKHTVFGQIA EGFDTLTRIN EAYVDPKNRP YKNIRIKHTH ILDDPFDDPP QLAEMMPDAS PEGKPKEEVK DDVRLEDDWV
201: PMDEELGAQE LEEVIREKAA HSSAVVLESI GDIPEAEVKP PDNVLFVCKL NPVTEDEDLH TIFSRFGTVV SADVIRDFKT GDSLCYAFIE FENKESCEQA
301: YFKMDNALID DRRIHVDFSQ SVSKLWSQFR QKDSQKGKGN GCFKCGSTDH IAKDCVGGPS SKFIVKDQNR QHGGGEGYEM VFEGDVHETP KHNSHERERS
401: EKIQRRSPHG NGEGKRQHRD ERDDGRRQHD REDARELERK HRERKERESR EDEDRRRRRR REESRDKESR RERDEDDHRS HRDYKERRRE RDDRHGREAR
501: HERRDR

Arabidopsis Description

CYP59Peptidyl-prolyl cis-trans isomerase CYP59 [Source:UniProtKB/Swiss-Prot;Acc:Q6Q151]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.